Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq105 107 2e-18 >seq105 Length=68279 Score = 107 bits (118), Expect = 2e-18 Identities = 343/521 (66%), Gaps = 12/521 (2%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || || || || | | ||| || || || ||||| |||||| Sbjct 55803 GCAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCT 55744 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || | |||||| | ||||||||| | |||||| ||||||||||| || Sbjct 55743 GGCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATATT 55684 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGTATCA- 127696 ||||| ||||| || || |||| ||| | || |||| ||| |||| |||| | | Sbjct 55683 CCCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAA---AGCTAGACTCCTTGTCTGAT 55627 Query 127697 AACCACTTCATCGCCCACTGTGCCTT-TTTCTCGATACATGGGACGGTCTGGATCGCTTC 127755 | |||| | | ||||| | |||||| ||| | |||| || | ||| || || | Sbjct 55626 ATCCACCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACA-GGAATATTCTCCATTGCCTG 55568 Query 127756 AAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 127815 || | |||||||||| | ||| |||||||| | ||||| ||| ||| | Sbjct 55567 GAATAAGAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACAT 55508 Query 127816 TTCGCCGTGGACCATTTC-ATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTA 127874 || |||| | |||| || || || | |||||||| | | || ||||||| Sbjct 55507 CTCTGCGTGTATGTTTTCTATCAT-AATTTGGAATCCGTAGAAACATCTTGCCTCGCTTA 55449 Query 127875 TCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 127934 | || || || ||||| | | | | || ||| ||||||||||| || ||| Sbjct 55448 TTTGAACTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAG 55389 Query 127935 CAAAAAACGCCAGGATATACTTTATGAA-TTTCTGTTCATTCTCGTTCAGGGTCTTCCAG 127993 |||| || || || | ||| || || | ||| ||||| | || || | | |||| Sbjct 55388 CAAAGAATGCAAGTACATAGGAGATAAAGTGTCT-CTCATTTGCATTTAGCTTTTCCCAG 55330 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 || | | || ||||| | || || || || |||||||| Sbjct 55329 TCAGCTTGGTCATTTGACAAGTCAACTTCTTCTGCAGTCCA 55289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505773595760