Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq103 86.0 4e-12 >seq103 Length=70461 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 39523 GTGCTTTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCATCGTCCAATTGTTTCC 39580 || |||||||||||||| || || || | ||| | | | |||| |||| ||||| | Sbjct 50324 GTACTTTCTTTTTGTATGTTGTAGTCAG--AAAGTGTTCTTCCATCCTCCAGCTGTTTTC 50267 Query 39581 CGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTT 39640 | |||| ||||| | || || || | |||| ||||||||||| ||| ||| || Sbjct 50266 CTGCAAAGATTAATCTTTGTTGGTCGGGTGGTATTCCTTCTTTGTCTTGTATCTTTGCTT 50207 Query 39641 TAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAG 39700 | | || ||| |||||| ||| || || | ||||| |||||||| || | | Sbjct 50206 TTACATTCTCTATTGTGTCACTTGGTTCTACTTCAAGTGTAATGGTTTTACCAGTGAGTG 50147 Query 39701 TTTTTACGAAGATCTGCATG 39720 | |||||||| ||||||||| Sbjct 50146 TCTTTACGAATATCTGCATG 50127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347368812556538