Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq105 104 3e-17 >seq1 Length=377182 Score = 107 bits (118), Expect = 2e-18 Identities = 282/428 (66%), Gaps = 12/428 (3%) Strand=Plus/Minus Query 184004 TTGAGTTTAAGTAAACTCGGCCAGAAATAATGAATCATGTTAAGAATAAGTCCCTTGATA 184063 |||| |||||| | | || |||| | | || |||||| | || || || || ||| Sbjct 322212 TTGATTTTAAGAAGAGATGGGAAGAAGTGGTCAAGCATGTTTATGATCAGACCTTTAATA 322153 Query 184064 TGACTTCCATCGTTATCTGCATCGGTCATGATCATGAGTCTTCCGTATCTGAG---TTCG 184120 ||||| ||||| | |||| ||| ||||||||||| | || || | || ||| Sbjct 322152 TGACTCCCATCATGATCTTGATCCGTCATGATCATTAAATGCCCATACCGCAGACTTTCT 322093 Query 184121 GAGAGTGATGTATACACTTTCCCTTGCTGAAGCCCCAAAATCTTTTTAAGATCATTAAAC 184180 | | | || ||| | ||||| ||||| || |||| || || || | | || | Sbjct 322092 GTG---GTTGCATATTCCTTCCCGTGCTGTAGACCCATGATTTTCTTGATGTTGTTTATT 322036 Query 184181 TCCTTGTTTTCGGTAAGTTGTTTTACACTCGCGTCACGCACGTTCTTACATTTACCCCTA 184240 ||| |||| || | || || || | || || | || ||| | ||||||| Sbjct 322035 TCCATGTTCTCCATTAGCTGCTTATGCGTGGCTTCTCTTACATTCAAAAGCTTACCCCGT 321976 Query 184241 AGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAATTGCAAGTGTT 184300 || ||||| ||||| |||| ||| | || | || || |||||| | || | | | Sbjct 321975 AGAGGAAATACACCATAATTATCCCTTCCTATGACAGAGAGACCACTTACAGCTAAAGAT 321916 Query 184301 TTTGCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGTGGTACCGGCT 184360 || ||||| || ||||| || | || | |||||||| | ||| | | ||||| || Sbjct 321915 TTAGCAGAGTCTCCTTCTGTTAGTATTAAAGTACACTGAGCAGCATACCTCGTACCTGCA 321856 Query 184361 TTATTGGCATCGTCGAGTTTTGGAATACCCGTTATTTTTGAT---TTACGAGACCCATCT 184417 ||||| ||||| || ||||||||||| || | | ||||||| ||| || |||||| Sbjct 321855 TTATTTGCATCATCAAGTTTTGGAATTCCTCTGAGTTTTGATGTCTTATGA---CCATCT 321799 Query 184418 Gttttttt 184425 || || || Sbjct 321798 GTCTTCTT 321791 >seq105 Length=68279 Score = 104 bits (114), Expect = 3e-17 Identities = 565/886 (64%), Gaps = 27/886 (3%) Strand=Plus/Minus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCG-AGTGATATATTCTCCA 115120 ||| ||||| || ||| | ||||| || |||| ||| | ||| ||||| || ||||| Sbjct 56086 ATACTCACCTACACGCATCTCAAAGAAATTTGCTTTTCT-TCGCAGTGAAATTAGCTCCA 56028 Query 115121 TAAAATCAAAGGGATTTTTCGTGTTCCAGATTTTATTGTGACCCACTTGTTTTGATAATC 115180 ||||||| || || ||| | ||||| ||| || | | | | | || ||| | Sbjct 56027 TAAAATCGAATGGGTTTGTTGTGTTGTAGACCTTTTCTTCATTTAGTGCAATTAGTAACC 55968 Query 115181 GATCCGCAACATATTCGATATACTCCGACATTTTACCGGAATTCATACCTATGAGACTAC 115240 |||| || ||| | || || |||| |||| | || || || ||||| | | | Sbjct 55967 GATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGATGCCTATTAAAGAAA 55908 Query 115241 ACGGAAGTGCGTCCGTAATGAATTCTTTTTCGATTGAAACGGCGTCTCTTA-TAATTTCT 115299 |||||||| || || | || |||||||| || ||| || ||| | || ||||| Sbjct 55907 CAGGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTCTAAAACTATTTTCT 55848 Query 115300 TCAATTGTATTTTGAGA-TGGTTTGTTTTTTAACATGTTGAATAATTCAACCGCAAATTC 115358 | | |||| | | | | |||| | | | | || | || || ||||| || Sbjct 55847 TGA----TATTCTTACACTTGTTTATGAGGTGAGAA--TGTAAAAGACAG--GCAAAGTC 55796 Query 115359 TTGGTGCATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGGAAGTAA 115418 ||| | |||||||||| || || || || ||| ||| | |||||| | | Sbjct 55795 ACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGCATAAG 55736 Query 115419 CCCTCTCTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAAC 115478 |||||||| || | ||| ||||| | ||| || ||||||||||| || || || Sbjct 55735 GCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATATTCCCTCTAC 55676 Query 115479 ACACGCAAAGGCTAATAAACGTTCAGCAAA--TGG--TCGTT-TCTTATCAAACCACTTC 115533 ||| ||||| || | || | || ||||| | | || || ||| || | |||| | Sbjct 55675 ACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGAT--ATCCACCTA 55618 Query 115534 ATAGCCCATTTCGCCTT-TCTTTCGATACACGGAATTGTTTGAATTGCTTCGAATAATTG 115592 | ||||| | ||||| | ||| |||| ||||| | | ||||| | |||||| Sbjct 55617 AGGGCCCAGTCTGCCTTCTTTTTTATTACA-GGAATATTCTCCATTGCCTGGAATAAGAA 55559 Query 115593 TTTCTTTTCGCTAGAATTTTTTATATACTTGTCTATGAGTTTACTGTACGTTTCACCGTG 115652 |||||||| || || || || || ||||||| ||| ||| ||| | || |||| Sbjct 55558 GTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACATCTCTGCGTG 55499 Query 115653 TACCATTTCATTGTGAGATTGATAGGCATAAAATGATCGAGCCTCCGTAAGTTGTATTTC 115712 || |||| | | ||| | | || || ||| ||||| | | ||| | ||| Sbjct 55498 TATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGAACTTC 55439 Query 115713 ATCTGCAAAATTATTATTTATATTTTCAAAAACTATACCATCAGAACCAGCaaaaaaaGC 115772 ||||| | | | || |||||| || || ||||| || ||||||| || || Sbjct 55438 TGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGAATGC 55379 Query 115773 TAAAATATATTTTATAAAATGTTTTTCATTATCACTTAATTCATTCCAATCATCCATATC 115832 | | ||| ||||| ||| | ||||| || ||| | | ||| ||| | || Sbjct 55378 AAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTCAGCTTGGTC 55319 Query 115833 TTTGGAAAAGTCTATCTCTTCAGCGGTCC--AAT-TTGACATTTGGGCCTTTTTATACAA 115889 || || ||||| | ||||| || |||| ||| || || | || | |||||||| Sbjct 55318 ATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACT---GCATCTTTATACAT 55262 Query 115890 AGTCCATAAATTTTCATGTTCTATTGGAAATACAGTAAACCTACTG 115935 | ||| | || | ||| |||||||| || | | ||| ||| || Sbjct 55261 TGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTATTG 55216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131323316240