Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq35 131 2e-25 seq105 125 9e-24 >seq35 Length=104599 Score = 131 bits (144), Expect = 2e-25 Identities = 652/1027 (63%), Gaps = 26/1027 (3%) Strand=Plus/Plus Query 111642 GGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGT 111701 || ||||||| ||| || ||||| |||| | | ||||| || ||||| | | Sbjct 77682 GGAATCCATGAGGATGACATTGAATCTGCCATACAAACATATGAGCTTATGTC---TACT 77738 Query 111702 ATG---TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATG 111758 | | || || || || || || || || |||||| ||| || ||| || || Sbjct 77739 AAGCACTTTATACATGCTACGCCTACTCTTTTCAACAGTGGAACCATTTCACCACAGCTG 77798 Query 111759 TCCAGTTGTTTCCTTATTGCAAACAAGGAG-GATTCAATCAATGGCATTTACGGCACTCT 111817 ||||| ||||| |||||| | ||| |||||||| |||| || ||| || || Sbjct 77799 TCCAGCTGTTTT-TTATTGGCTATGCAGAGTGATTCAATTGATGGAATATACAATACGCT 77857 Query 111818 CACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGT 111877 | | ||||| || |||||| || || || || || || ||||||| | | Sbjct 77858 TAAGCAGTGTGCAATGATATCAAAGCATGCAGGAGGGATTGGTGTGAACATCCACAACAT 77917 Query 111878 CAGAGCCAACAAGTCTCGTA--TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCA 111935 ||||| || | ||| || ||| || || |||||| ||| |||| || ||||| Sbjct 77918 CAGAGGCACT--GGCTCATACATTAAGGGAACCTTTGGTCATTCAAATGGGATAATTCCT 77975 Query 111936 ATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAG--- 111992 ||||| | || ||| | |||||| | ||||| |||| | || | | | Sbjct 77976 ATGCTGAGAGTGTTTGATGCCACATCAAAGTATGTTGACCAGGGAGGTAATAAGAGGCCT 78035 Query 111993 GGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTG 112052 ||||| || | || ||| |||||||||||||| || || | || || | || ||| Sbjct 78036 GGATCAATTGTTGTGTATATTGAGCCATGGCACAGAGACATATTTGACTTTTTAGATTTG 78095 Query 112053 CGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATT 112112 | || ||| | || || | || | || | |||| | || ||| | Sbjct 78096 AGAAAGAATACGGGTAAGGAAGAAATGAGGGCAAGAAATTTGTTCTTAGGACTATGGGTA 78155 Query 112113 CCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC 112172 || || | || |||||||||||||| || || ||||| | || ||||| || | Sbjct 78156 CCTGACTTATTTATGAAGAGAGTTGAAGAAGACGGGGATTGGGCGCTATTTTGCCCCAAT 78215 Query 112173 AAGGCACCCGGTCTCTCCGATGCCGTG-GGTGAGGAGTTTGAAGCCCTCTACACAAAGTA 112231 | |||| || || ||| | || || || || ||||||| || || | |||| Sbjct 78216 ATGGCAAAAGGCCTGCACGA-GAAGTACGGAGATGAATTTGAAGAGCTGTATGTACAGTA 78274 Query 112232 CGAGGAAGAA---AGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTAT 112288 ||| ||||| || | || | ||| ||||| | ||||||| || || Sbjct 78275 CGAAAAAGAAGAGAGAATTGAGAAGAAGGTGGTTCCAGCAAGAAAGCTGTGGAAGGCAAT 78334 Query 112289 TCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCA 112348 ||| || | | | || || ||| ||| || || || || |||||| ||||||| Sbjct 78335 TCTTGAGGCAGAGATTGAAACAGGTGTACCGTACATTCTCTATAAAGACAGCTGTAACAG 78394 Query 112349 AAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTT 112408 |||||| || || ||||| | || ||||||||| | |||| | ||| | || || | Sbjct 78395 AAAGAGCAACCAGCAGAATCTTGGAGTGATCAAGGGAAGCAACTTGTGTGCTGAGATTGT 78454 Query 112409 GGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAA 112468 || | ||||| | |||| | || ||||||||||| |||||| | || || || | Sbjct 78455 TGAGTACACAGATCCAAATGAAATTGCGGTGTGTAACCTGGCATCACTTGCACTTCCAAC 78514 Query 112469 GTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAAC 112528 || | || | |||| || |||| | | | || || | || || | |||| Sbjct 78515 ATACATTGA-----AAACAATGA-ATTTAACTTCAATAAGCTAAAGGAGGTCGCAAAAAT 78568 Query 112529 TGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCG 112588 || | |||||||| |||| | | |||||| ||| ||||| | || ||| Sbjct 78569 AGTAGCCAAAAACCTGAACAAAATCATTGATGTAAACAAATACCCATTAGAACAAGCTAA 78628 Query 112589 TAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATT 112648 || |||||||||| ||||| || || || | ||||| || || || || ||||||| Sbjct 78629 GAATTCTAATATGAAGCACCGCCCTATAGGAATGGGTGTACAGGGGCTAGCAGATGTATA 78688 Query 112649 CATTCTT 112655 ||||||| Sbjct 78689 CATTCTT 78695 >seq105 Length=68279 Score = 125 bits (138), Expect = 9e-24 Identities = 347/521 (67%), Gaps = 12/521 (2%) Strand=Plus/Plus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGAA 101876 |||||||| ||||| || || | ||||| || | || ||| | | ||||||| | Sbjct 55289 TGGACTGCAGAAGAAGTTGACTTGTCAAATGACCAAGCTGACTGGGAAAAGCTAAATGCA 55348 Query 101877 AATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTT 101936 ||||| | | || || || | || ||||||||||||| || ||||||||||| Sbjct 55349 AATGAGAGACACTTTATCTCCTATGTACTTGCATTCTTTGCTGCCTCAGATGGAATTGTA 55408 Query 101937 TTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCTTTC 101996 ||| || | | | | |||||| || || ||| || || |||| |||| Sbjct 55409 AATGAAAACTTAGTTGAAAGGTTTGCTTCAGAAGTTCAAATAAGCGAGGCAAGATGTTTC 55468 Query 101997 TATGCGTATCAATGTCATAAT-GAAATGGTGCATGGGGAGACATACAGTAAACTCATAGA 102055 || | | ||| | || || |||| | || | |||| || ||| ||| ||||| Sbjct 55469 TACGGATTCCAAATT-ATGATAGAAAACATACACGCAGAGATGTATAGTTTACTAATAGA 55527 Query 102056 CAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCC 102115 || || || |||||| ||| || ||||| | || | || || | | |||| Sbjct 55528 CACCTACATCAAGGATACTGCAGAAAAGAACTTCTTATTCCAGGCAATGGAGAATATTCC 55587 Query 102116 ATGTATTCAAAA-GAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAA--AGTCGCGTT 102171 |||| | |||| ||| || || ||||| | | |||| | | | |||| |||| | Sbjct 55588 -TGTAATAAAAAAGAAGGCAGACTGGGCCCTTAGGTGGATATCAGACAAGGAGTCTAG-- 55644 Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||||| || | || | || ||||| ||||| ||||| || ||||||||||| || | Sbjct 55645 -CTTTGCAGACAGGCTAGTTGCTTTTGCATGTGTAGAGGGAATATTCTTCTCTGGATCAT 55703 Query 102232 TCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 | ||| | |||| ||||| |||||| |||| || ||||||||||| ||||| ||| Sbjct 55704 T-TGCATCAATTTTCTGGCTTAAGAAGAGAGGCCTTATGCCAGGTCTTACTTTCTCTAAC 55762 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| ||| | || || ||||| ||| || ||||| Sbjct 55763 GAGCTGATCAGCAGAGATGAAGGACTTCACTGTGACTTTGC 55803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740956773920