Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq35 107 2e-18 >seq35 Length=104599 Score = 107 bits (118), Expect = 2e-18 Identities = 493/776 (64%), Gaps = 12/776 (2%) Strand=Plus/Minus Query 110275 TATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTAT 110334 ||| | || || |||| || || || || ||||| | | | || | | || ||||| Sbjct 78517 TATGTTGGAAGTGCAAGTGATGCCAGGTTACACACCGCAATTTCATTTGGATCTGTGTAC 78458 Query 110335 TCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGAT 110394 || | ||| || | |||||||||| | ||| || || || | |||| ||| || Sbjct 78457 TCAACAATCTCAGCACACAAGTTGCTTCCCTTGATCACTCCAAGATTCTGCTGGTTGCTC 78398 Query 110395 TTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTG 110454 || ||| || || |||||||| ||||| || ||| ||||| ||| || || Sbjct 78397 TTTCTGTTACAGCTGTCTTTATAGAGAATGTACGGTACACCTGTTTCAATCTCTGCCTCA 78338 Query 110455 AGAATGGCCTTCCATACATCGGCGGCGGGGAC-AGTTGCGTTAGCGAGAC---CTTCCTC 110510 ||||| |||||||| | | || || || | | | || | | | |||| | Sbjct 78337 AGAATTGCCTTCCACAGCTTTCTTGCTGGAACCACCTTC-TTCTCAATTCTCTCTTCTTT 78279 Query 110511 CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC 110570 ||||||| |||| || |||||||| | ||||||| || || || || || Sbjct 78278 TTCGTACTGTACATACAGCTCTTCAAATTCATCTCCGTACTTCTCGTGCAGGCCTTTTGC 78219 Query 110571 CTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTC 110630 | | | ||| || || || | ||||| || | || ||||| |||||||| || | ||| Sbjct 78218 CATATTGGGGCAAAATAGCGCCCAATCCCCGTCTTCTTCAACTCTCTTCATAAATAAGTC 78159 Query 110631 AGGAATCCACATCGCCGAGAA--AAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTG 110688 ||| | ||| | | |||| || || | | | ||||| | ||| || Sbjct 78158 AGGTACCCATAGTCCTAAGAACAAATTTCTTGCCCTCATT--TCTTCCTTACCCGTATTC 78101 Query 110689 AGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATG 110748 | | || |||||||| | || || ||||||||| || | ||| ||| | || Sbjct 78100 TTTCTCAAATCTAAAAAGTCAAATATGTCTCTGTGCCATGGCTCAATATACACAACAATT 78041 Query 110749 GATCC---CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTG 110805 ||||| | | | ||| |||||| |||||| || |||||||| || || || Sbjct 78040 GATCCAGGCCTCTTATTACCTCCCTGGTCAACATACTTTGATGTGGCATCAAACACTCTC 77981 Query 110806 AGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCA 110865 ||||||||||| || |||| || |||||| || ||| |||| || | || | Sbjct 77980 AGCATAGGAATTATCCCATTTGAATGACCAAAGGTTCCCTTAATGTATGAGCCAGTGCCT 77921 Query 110866 CGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCT 110925 | |||| |||||| | || |||||| || || || ||| || |||||||| Sbjct 77920 CTGATGTTGTGGATGTTCACACCAATCCCTCCTGCATGCTTTGATATCATTGCACACTGC 77861 Query 110926 GTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAA 110985 | || ||| || || |||||||| ||||| || | || | || ||| || Sbjct 77860 TTAAGCGTATTGTATATTCCATCAATTGAATCACTCTGCATAGCCAATAAAAAACAGCTG 77801 Query 110986 GACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 |||| ||| || | ||||| ||||| || ||||| || ||||| || || Sbjct 77800 GACAGCTGTGGTGAAATGGTTCCACTGTTGAAAAGAGTAGGCGTAGCATGTATAAA 77745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974630630800