Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq35 127 2e-24 seq1 82.4 9e-11 >seq35 Length=104599 Score = 127 bits (140), Expect = 2e-24 Identities = 1011/1612 (63%), Gaps = 46/1612 (3%) Strand=Plus/Minus Query 105692 TGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTG 105751 ||||| ||||||| | ||| | | ||| ||| |||||| ||| | ||| ||| Sbjct 79270 TGACTTTGGTCAACATATGCACCTCTGTCTGCTGCCTGATCAATTACAGCTTTCTGCTTT 79211 Query 105752 ATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGA 105811 |||||||| || || ||| || | ||||||| ||| || || | ||| ||||| Sbjct 79210 ATTTCCCAAACAGTTTTGTACAGCTGTTTGATATTATCAGGTATGCTGGGGATGTTTTGG 79151 Query 105812 ATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACC--AAAGACC--AAT 105867 ||||| || | || | || | | |||||| || ||| || | || || ||| Sbjct 79150 ATTGATCCTTCATGCTCAATAATAATGTTCTTCATCTC--TGGCCCCCACAGGCCTAAAT 79093 Query 105868 CTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCT 105927 || || |||| || || | || || ||||| || ||||| | ||| ||||| Sbjct 79092 CTGCT--AGATTTTTTACCAAGTGAGAATTCACAATTTGGAATTCTCCTGAGAGTGTTCT 79035 Query 105928 TCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTG 105986 ||| || || || | ||| | |||||||| |||||| | |||||| |||| | Sbjct 79034 TCTGGTGTATATATTACTGGTGAAACCCTCAAAGCACTCATTAA-ATCCAAGAATTTGGG 78976 Query 105987 CGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGA 106046 ||| ||||| |||||||| | |||| || | ||| || || | ||| | | || Sbjct 78975 AGGTTGAGGCGGTTGGCATGAGAGCCACTAACAAACTATTTCGTACACCATGGGCAGCGA 78916 Query 106047 TGCGTTCCTTGAGAACATCCCAGTCGTAGTTG-----AGCTTGGTTTCACCTTCCCACAT 106101 | | || ||| || ||||||| | | | || ||| |||| |||||| Sbjct 78915 TCTTCTTTTTAAGACCAGCCCAGTCCCATTGGTCAGAAGGCTGGA--CACC---CCACAT 78861 Query 106102 ATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTG 106161 |||| | || || | || | | | ||| || || ||| ||| || | || | Sbjct 78860 ATCATACTGCAGTATTCCCTTGCTCACAGGACTGCCTGCATATGACTCGTATGGGCCGTA 78801 Query 106162 GGCTTCAG--CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATA 106219 |||| | ||| |||| ||||| || | | || ||||||||||| || Sbjct 78800 --CTTCTGTGCCAGTTCATTTGATGCCTCAAGCGCACCAAAGTAAATGGTTTCAAATATT 78743 Query 106220 CGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA-AATAAATAC 106278 || | ||| ||||| | ||||||| || | || || ||| |||| Sbjct 78742 GCTTTGTTTAACTCTGCTGCTTCCTTGCTCTCAAATGGATACCC-CATAAGAATGTATAC 78684 Query 106279 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTT--TCGC 106336 ||| || || || || ||||||| || ||||| | ||| ||||||||| || | || Sbjct 78683 ATCTGCTAGCCCCTGTACACCCATTCCTATAGGGCGGTGCTTCATATTAGAATTCTTAGC 78624 Query 106337 GCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 ||| || ||| || ||| ||||||| | ||| || ||||||| || || Sbjct 78623 TTGTTCT-AATGGG-TATTTGTTTACATCAATGATTTTGTTCAGGTTTTTGGCTACTATT 78566 Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTT 106456 |||| || || | || || | | | ||| | | | | | |||| || || || Sbjct 78565 TTTGCGACCTCCTTTAGCTTATTGAAGTTAAA--TTC-ATTGTTTTCAATG---TATGTT 78512 Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 ||||| || | |||||||| || || || || | |||| |||||||||||| | | Sbjct 78511 GGAAGTGCAAGTGATGCCAGGTTACACACCGCAATTTCATTTGGATCTGTGTACTCAACA 78452 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || | |||||||||| | ||| ||| || | ||||| ||||| |||||| || Sbjct 78451 ATCTCAGCACACAAGTTGCTTCCCTTGATCACTCCAAGATTCTGCTGGTTGCTCTTTCTG 78392 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 || || || || ||||| ||||| || || || || ||| || || |||||| Sbjct 78391 TTACAGCTGTCTTTATAGAGAATGTACGGTACACCTGTTTCAATCTCTGCCTCAAGAATT 78332 Query 106637 GCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGC---CTCGTAC 106693 |||||||||| | ||||| || | || | || ||| | |||||| Sbjct 78331 GCCTTCCACAGCTTTCTTGCTGGAACCACCTTCTTCTCAATTCTCTCTTCTTTTTCGTAC 78272 Query 106694 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 106753 | | || || ||||||| || || || | ||| || ||| |||| | | Sbjct 78271 TGTACATACAGCTCTTCAAATTCATCTCCGTACTTCTCGTGCAGGCCTTTTGCCATATTG 78212 Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813 || || || || | ||| | || | || ||||| | |||||| || | ||| || | | Sbjct 78211 GGGCAAAATAGCGCCCAATCCCCGTCTTCTTCAACTCTCTTCATAAATAAGTCAGGTACC 78152 Query 106814 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873 || || | | || | || ||| || ||||| | ||| || || || Sbjct 78151 CATAGTCCTAAGAACAAATTTCTTGCCCTCATTTCTTCCTTACCCGTATTCTTTCTCAAA 78092 Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC---C 106930 || | || || | || || |||||||||||||| ||| || | || ||||| | Sbjct 78091 TCTAAAAAGTCAAATATGTCTCTGTGCCATGGCTCAATATACACAACAATTGATCCAGGC 78032 Query 106931 TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 106990 | | || | || | ||||| | |||||| | ||| || | ||||| ||| Sbjct 78031 CTCTTATTACCTCCCTGGTCAACATACTTTGATGTGGCATCAAACACTCTCAGCATAGGA 77972 Query 106991 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 107050 || || |||| ||| |||||| || ||| ||| || | || |||| | | Sbjct 77971 ATTATCCCATTTGAATGACCAAAGGTTCCCTTAATGTATGAGCCAGTGCCTCTGATGTTG 77912 Query 107051 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 107110 ||||||| || ||||| || || || |||||| || ||||||| | |||| || Sbjct 77911 TGGATGTTCACACCAATCCCTCCTGCATGCTTTGATATCATTGCACACTGCTTAAGCGTA 77852 Query 107111 CCATAGATACCGTTGATTGAGTC-CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169 || || || | ||||| || ||| | | | |||| || || ||||||| ||| Sbjct 77851 TTGTATATTCCATCAATTGAATCACTCTGCATAGCCAATAA-AAAACAGCTGGACAGCTG 77793 Query 107170 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG-GG 107228 ||| || ||| ||||| || || || || || || || || | | | | | Sbjct 77792 TGGTGAAATGGTTCCACTGTTGAAAAGAGTAGGCGTAGCATGTAT-AAAGTGCTTAGTAG 77734 Query 107229 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 107280 |||| || ||||| | | | |||| |||||||| ||| | ||||| || Sbjct 77733 ACATAAGCTCATATGTTTGTATGGCAGATTCAATGTCATCCTCATGGATTCC 77682 >seq1 Length=377182 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 168289 ATCCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAA 168348 |||| |||||||||||||| | ||||||||| |||||||| ||||| |||| ||||| | Sbjct 323057 ATCCTGTACCGATACCTTCTGATCCATTCACTAGAACCATCGGTATAATTGGAATGTACA 322998 Query 168349 AGTCTGGTTC 168358 ||||||||| Sbjct 322997 TGTCTGGTTC 322988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979428294640