Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq103 127 1e-24 seq109 109 4e-19 >seq103 Length=70461 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| |||| || || || | |||||||| |||||||| || ||||| ||||| || Sbjct 50355 TCCTCCTCTCAGTCTTAAGACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGA 50296 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| ||| | |||| |||||||||||||| ||||| |||| || ||| ||||| | || Sbjct 50295 AAGTGTTCTTCCATCCTCCAGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGG 50236 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || || ||||| ||||| ||| || |||| | |||| | || || Sbjct 50235 TATTCCTTCTTTGTCTTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTAC 50176 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || |||||||| || ||||| ||||| || || |||||||| Sbjct 50175 TTCAAGTGTAATGGTTTTACCAGTGAGTGTCTTTACGAATATCTGCAT 50128 >seq109 Length=56162 Score = 109 bits (120), Expect = 4e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 34750 CATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGT 34809 || |||| || |||| | || || | ||||| || || || ||||| |||||||||| Sbjct 24986 CACTTCCCCCTCTCAGTCGCAGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAGT 25045 Query 34810 CCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTT 34869 | ||||| | | | |||| || ||||||||||| ||||| ||||||| || ||||| Sbjct 25046 CAGAAAGTGTCCTTCCATCTTCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGTCGG 25105 Query 34870 GCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCT 34929 | || | ||| || || || ||||| ||||| |||| || |||| | | Sbjct 25106 GTGGTATCCCTTCTTTATCCTGTATCTTTGCCTTGACATTCTCTATTGAGTCACTTGGTT 25165 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || | || || || || || ||||| |||||||| || ||||||||| Sbjct 25166 CTACTTCCAGTGTAATTGTCTTCCCAGTGAGTGTCTTCACGAATATCTGCATA 25218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632864096208