Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq105 315 8e-81 seq35 188 8e-43 >seq105 Length=68279 Score = 315 bits (348), Expect = 8e-81 Identities = 598/868 (69%), Gaps = 22/868 (3%) Strand=Plus/Minus Query 18694 TCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAATGGATTTTTT 18753 ||||||||||| | ||||| | ||| || ||||||||||| ||||| ||| || Sbjct 56067 TCAAAGAAATTTGCTTTTCTTCGCAGTGAAATTAGCTCCATAAAATCGAATGGGTTTGTT 56008 Query 18754 ACATTATATA--tttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAA 18811 || || | |||| || | | || | | | ||||| | ||| || ||||| | || Sbjct 56007 GTGTTGTAGACCTTTTCTTCATT--TAGTGCAATTAGTAACCGATCTGCCACAAACTCAA 55950 Query 18812 TATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAA 18871 | || | ||| || | || || |||||||| |||||| |||||||| || | Sbjct 55949 TGTACTGGCACATAGAGTCTGAGTTGATGCCTATTAAAGAAACAGGAAGTGCATCAGTTA 55890 Query 18872 GAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAATAGATACA-ACTCTATC--TTCA 18927 ||| |||| ||| || | ||||||||| | | || | | | | ||| | || Sbjct 55889 AAAACTCTTTTTCAATCTCAACTGCCTCTAAAACTATTTTCTTGATATTCTTACACTTGT 55830 Query 18928 TTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCG 18987 ||| |||| | | |||| ||| | ||| ||||| ||||| || ||||| || Sbjct 55829 TTATGAGGTGAGA----ATGT--AAA----AGACAGGCAAAGTCACAGTGAAGTCCTTCA 55780 Query 18988 TCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAAC 19047 ||||| || |||| || ||||| || || | ||| ||||| || ||||| || || | | Sbjct 55779 TCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGCATAAGGCCTCTCTTCTTAAGC 55720 Query 19048 CAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACT 19107 ||||| || || |||||||||||||| |||||||| || ||||| ||||||||||||| Sbjct 55719 CAGAAAATTGATGCAAATGATCCAGAGAAGAATATTCCCTCTACACATGCAAAAGCAACT 55660 Query 19108 AGTCTTTCTCCATAACTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTT 19166 || || ||| || | |||| || || | ||| ||||| | || ||||| || ||||| Sbjct 55659 AGCCTGTCTGCAAAGCTAGACTCCTTGTC-TGATATCCACCTAAGGGCCCAGTCTGCCTT 55601 Query 19167 CTTTTTTA-CACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTAT 19225 |||||||| ||| || || |||| || | | |||| | | || | |||| Sbjct 55600 CTTTTTTATTACA-GGAATATTCTCCATTGCCTGGAATAAGAAGTTCTTTTCTGCAGTAT 55542 Query 19226 CTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCA 19285 | || | || | ||||| | |||||| ||||| |||| || || |||||||| | Sbjct 55541 CCTTGATGTAGGTGTCTATTAGTAAACTATACATCTCTGCGTGTATGTTTTCTATCATAA 55482 Query 19286 TCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGA 19345 | || |||||||| ||||||||||| || |||| || ||||| | ||| ||||| | Sbjct 55481 TTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGAACTTCTGAAGCAAACCTTTCAA 55422 Query 19346 CCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAA 19405 | || |||||||| || |||||||| || ||||| ||||| | ||||| |||| Sbjct 55421 CTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGAATGCAAGTACATAGGAGATAA 55362 Query 19406 AATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTT 19465 | ||| | |||| || ||| | | ||| ||| || || || || || |||| Sbjct 55361 AGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTCAGCTTGGTCATTTGACAAGTCAACTT 55302 Query 19466 CTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATT 19525 |||| | ||||| || ||| |||| | ||||||||| ||| |||||| ||| | Sbjct 55301 CTTCTGCAGTCCAGAATACTGCCACTGCATCTTTATACATTGCCCAAATATCATGATGCT 55242 Query 19526 GTATAGGAAATATAACAAATCTATTTTT 19553 ||| || || |||||||||||||| || Sbjct 55241 CTATTGGGAAAATAACAAATCTATTGTT 55214 >seq35 Length=104599 Score = 188 bits (208), Expect = 8e-43 Identities = 1015/1629 (62%), Gaps = 28/1629 (2%) Strand=Plus/Minus Query 46974 ttttCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || || || |||||||||| | | || ||| ||||| |||||||| | || Sbjct 79414 TTATCTACGGTGAACTTAATTGCAGCTTGGGATGGTTTGGTTCGCAAATAATAAGTTCCT 79355 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 || || | || ||||||| ||||| ||||| || |||| || | | | | ||| Sbjct 79354 GTTTTAAGTCCCTTTTTCCATCCGTAGAAGTGCATGCTTGTTAGTTGGGCAAAGGTTGGT 79295 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 ||||| ||||| || | || ||||| || |||| | |||||||||| || |||||| Sbjct 79294 GTAGAAATGTGAATGTTCATCGACTGACTTTGGTCAACATATGCACCTCTGTCTGCTGCC 79235 Query 47154 ATATCTAAAATAACCCTTTGTGGT--ATCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211 ||| || || |||| || | || ||||| || ||||| || | ||||| || | Sbjct 79234 TGATC--AATTACAGCTTTCTGCTTTATTTCCCAAACAGTTTTGTACAGCTGTTTGATAT 79177 Query 47212 CTTCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttttctataattttgtttttta 47268 || || | | | | ||||| || |||||| | | || ||||| |||| || | Sbjct 79176 TATCAGGTATGCTGGGGATGTTTTGGATTGATCCTTCATGCTCAATAATAATGTTCTTCA 79117 Query 47269 attcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328 || ||| || | || | || |||||| | |||| ||| ||||||| Sbjct 79116 TCTCTGGCCCCCACAGGCCTAAATCTGCTAGATTTTTTACCAAGTGAGAATTCACAATTT 79057 Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATT 47388 | |||||||| || ||| ||| | | | ||||||||||| || | || | | | Sbjct 79056 GGAATTCTCCTGAGAGTGTTCTTCTGGTGTATATATTACTGGTGAAACCCTCAAAGCACT 78997 Query 47389 CATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTAT 47448 ||||| ||||| |||||| | ||||| || || |||||| || ||||| || |||| Sbjct 78996 CATTAAATCCAAGAATTTGGGAGGTTGAGGCGGTTGGCATGAGAGCCACTAACAAACTAT 78937 Query 47449 TTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATG 47508 ||| ||| |||| |||| ||| ||||| | || || | Sbjct 78936 TTCGTACACCATGGGCAGCGATCTTCTTTTTAAGACCAGCCCAGTCCCATTGGTCAGAAG 78877 Query 47509 GAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATG 47568 | ||| ||| | |||||| || || ||||| || || | ||| || ||||| Sbjct 78876 GCTGGACACCCCACATATCATACTGCAGTATTCCCTTGCTCACAGGACTGCCTGCATATG 78817 Query 47569 TTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATA 47628 | || || ||||| | || |||||| ||| || | |||| | | || | Sbjct 78816 ACTCGTATGGGCCGTACTTCTGTGCCAGTTCATTTGATGCCTCAAGCGCACCAAAGTAAA 78757 Query 47629 TTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGAT-TCAAAAGGATANNNN 47687 | |||||||||||| | |||||| | |||||| || | ||||| ||||| Sbjct 78756 TGGTTTCAAATATTGCTTTGTTTAACTCTGCTGCTTCCT-TGCTCTCAAATGGATACCCC 78698 Query 47688 NNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTA 47747 || |||||| | || || ||||| || || || || | || | || Sbjct 78697 ATAAGAATGTATACATCTGCTAGCCCCTGTACACCCATTCCTATAGGGCGGTGCTTCATA 78638 Query 47748 TTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNN 47807 |||||| || ||||| | |||||| |||||||||| ||| || ||||| || || Sbjct 78637 TTAGAATTCTTAGCTTGTTCTAATGGGTATTTGTTTACATCAATGATTTTGTTCAGGTTT 78578 Query 47808 NNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTATAACA 47867 | | || ||| ||||| || | ||| | || ||| || Sbjct 78577 TTGGCTACTATTTTTGCGACCTCCTTTAGCTTATTGAAGTTAAATTCATTGTTTTCAATG 78518 Query 47868 AACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATAT 47927 | | |||||| | ||||| || ||||| || || | |||||||||| || || Sbjct 78517 TATGTTGGAAGTGCAAGTGATGCCAGGTTACACACCGCAATTTCATTTGGATCTGTGTAC 78458 Query 47928 TGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTN 47987 | | || |||||||| | || | | ||||| || | ||| || || || | Sbjct 78457 TCAACAATCTCAGCACACAAGTTGCTTCCCTTGATCACTCCAAGATTCTGCTGGTTGCTC 78398 Query 47988 NNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCA 48047 ||||||| ||| || || || || | ||| || ||||| |||| | ||| Sbjct 78397 TTTCTGTTACAGCTGTCTTTATAGAGAATGTACGGTACACCTGTTTCAATCTCTGCCTCA 78338 Query 48048 ATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCA-----T 48102 | || | ||||| | | || || | | || || || ||| || | Sbjct 78337 AGAATTGCCTTCCACAGCTTTCTTGC--TGGAACCACCTTCTTCTCAATTCTCTCTTCTT 78280 Query 48103 GTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGAC 48162 |||||| | ||| | || ||||||||||| || ||| ||| |||| | Sbjct 78279 TTTCGTACTGTACATACAGCTCTTCAAATTCATCTCCGTACT-----TCTCGTGCAGGCC 78225 Query 48163 ATTC-----ATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAA 48217 || ||| || || | | | ||||||| | || | || ||||| ||||||| Sbjct 78224 TTTTGCCATATTGGGGCAAAATAGCGCCCAATCCCCGTCTTCTTCAACTCTCTTCATAAA 78165 Query 48218 TATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACT 48277 || || |||| ||| || ||| || |||| || | || | |||||| || || | Sbjct 78164 TAAGTCAGGTACCCATAGTCCTAAGAACAAATTTCTTGCCCTCATTTCTTCCTTACCCGT 78105 Query 48278 ATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGC 48337 |||| || | | || | |||||| | ||| || |||||||| || | ||| | | Sbjct 78104 ATTCTTTCTCAAATCTAAAAAGTCAAATATGTCTCTGTGCCATGGCTCAATATACACAAC 78045 Query 48338 CATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAAC 48397 ||| || || | ||||||||||| || || | ||| | | || | | | || Sbjct 78044 AATTGATCCAGGCCTCTTATTACCTCCCTGGTCAACATACTTTGATGTGGCATCAAACAC 77985 Query 48398 TCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACT 48457 ||| | ||| || | || |||||||| |||| ||||||| ||| || ||| | Sbjct 77984 TCTCAGCATAGGAATTATCCCATTTGAATGACCAAAGGTTCCCTTAATGTATGAGCCAGT 77925 Query 48458 AGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACA 48517 |||| || || || | ||| || || ||||| || ||||| | ||||| Sbjct 77924 GCCTCTGATGTTGTGGATGTTCACACCAATCCCTCCTGCATGCTTTGATATCATTGCACA 77865 Query 48518 CCGTTTAAGGGTATCATAAATTCCTTCTATACTATCA-TCTATCATATTTAATAGAAAAC 48576 | | ||||| |||| || ||||| || || |||| ||| |||| |||| ||||| Sbjct 77864 CTGCTTAAGCGTATTGTATATTCCATCAATTGAATCACTCT-GCATAGCCAATAAAAAAC 77806 Query 48577 AACTAGACA 48585 | || |||| Sbjct 77805 AGCTGGACA 77797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107493097040