Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq103 138 9e-27 seq106 134 1e-25 seq109 109 4e-18 >seq103 Length=70461 Score = 138 bits (152), Expect = 9e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 |||||||||| ||||||||||| || ||||| |||| || |||||| ||| || Sbjct 50336 ACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGAAAGTGTTCTTCCATCCTCC 50277 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 || |||||||| ||||| || | |||||| || || || || ||||||||||| ||||| Sbjct 50276 AGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGGTATTCCTTCTTTGTCTTGT 50217 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCA-GTGTGAGTACATTCGAGAGTAACAGTTTT 563444 || ||| |||||| ||| ||||| ||| || ||| ||| || |||| ||||| Sbjct 50216 ATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTAC-TTCAAGTGTAATGGTTTT 50158 Query 563445 ACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| || || || ||||| || ||||| Sbjct 50157 ACCAGTGAGTGTCTTTACGAATATCTGCAT 50128 >seq106 Length=63987 Score = 134 bits (148), Expect = 1e-25 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 ||||||||||||| ||| || || || || ||||| |||| || |||||| |||| Sbjct 37658 AGTACAAGATGAATGGTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTTCCATCT 37599 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 || ||||||||||| ||||| || | |||||| || || ||||| |||||||| || || Sbjct 37598 TCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCC 37539 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCA-GTGTGAGTACATTCGAGAGTAACAGT 563441 || || ||| |||||| ||| ||||| ||| || ||| ||| || |||| || Sbjct 37538 TGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTAC-TTCCAGGGTAATTGT 37480 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||||| || ||||| || || || ||||| Sbjct 37479 CTTACCAGTGAGTGTTTTTACAAATATCTGCAT 37447 >seq109 Length=56162 Score = 109 bits (120), Expect = 4e-18 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || || || ||||||||||||| ||||| || || || || || |||| || || Sbjct 24997 CTCAGTCGCAGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAGTCAGAAAGTGTC 25056 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 ||| |||||| || |||||||| ||||| || ||||| || || || || || || ||| Sbjct 25057 CTTCCATCTTCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGTCGGGTGGTATCCCT 25116 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCA-GTGTGAGTACATTCGAG 563432 |||||||| || || ||| || || ||| |||| ||| || ||| ||| || Sbjct 25117 TCTTTATCCTGTATCTTTGCCTTGACATTCTCTATTGAGTCACTTGGTTCTAC-TTCCAG 25175 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATAGACA 563479 |||| || || ||||| || || || ||||| || |||||| ||| Sbjct 25176 TGTAATTGTCTTCCCAGTGAGTGTCTTCACGAATATCTGCATAAACA 25222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029286163481140