Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq105 289 3e-73 >seq105 Length=68279 Score = 289 bits (320), Expect = 3e-73 Identities = 606/887 (68%), Gaps = 22/887 (2%) Strand=Plus/Minus Query 36886 TTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCT-AGTGATATATTT 36944 ||| ||| || || || || | || || ||||||| |||| |||| ||||| || Sbjct 56090 TTTTATACTCACCTACACGCATCTCAAAGAAATTTG-CTTTTCTTCGCAGTGAAATTAGC 56032 Query 36945 TCCATAAAATCAAATGGATTAGATGTATTATATATAGTA-CTACATGATAATTCCTTCAG 37003 ||||||||||| ||||| || | ||| || || | | || ||| || | | | || Sbjct 56031 TCCATAAAATCGAATGGGTTTGTTGTGTTGTAGACCTTTTCTTCATT-TAGTGCAATTAG 55973 Query 37004 AAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAG 37063 | || ||| || ||||| || ||||| | ||||| || |||| || || |||| Sbjct 55972 TAACCGATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGATGCCTATTAA 55913 Query 37064 TTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTAT 37123 || |||| |||||| | ||| |||||| || || || ||| |||||| Sbjct 55912 AGAAACAGGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTCTAAAACTAT 55853 Query 37124 ATTAACAATAACTTCTT-CAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAA 37182 || ||| ||||| || ||| | | | | || |||| | ||| |||| Sbjct 55852 TTTCTTGATA--TTCTTACACTTGTTTATGAGGTGAGA-ATGTAAA----AGACAGGCAA 55800 Query 37183 AATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCA 37242 | ||||| || | ||||||||||| || |||| || ||||| || || | ||||||| Sbjct 55799 AGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGCA 55740 Query 37243 TTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTT 37302 | | ||||| || |||| ||| || |||| |||||| |||||||| ||||| || || | Sbjct 55739 TAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATATTCCCT 55680 Query 37303 CAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA-TAATCAGAAATCCAt 37361 | || |||||| || || || | ||| |||| | ||| | || || ||||| Sbjct 55679 CTACACATGCAAAAGCAACTAGCC-TGTCTGCAAAGCTAGACTCCTTGTCTGATATCCAC 55621 Query 37362 ttttttGTCCAATCTGCCTT-TAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAG 37420 | | ||| |||||||| | |||| ||| ||| | || ||||| | || | Sbjct 55620 CTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGG-AATATTCTCCATTGCCTGGAATAA 55562 Query 37421 AAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGA 37480 ||||| |||||| || |||| | || || || || ||||||||||||||||| || | Sbjct 55561 GAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACATCTCTGC 55502 Query 37481 GTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAAC 37540 ||| || ||||| || || || || || || ||||| || || || || |||||| Sbjct 55501 GTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGAAC 55442 Query 37541 ATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAA 37600 || | |||||| | | ||||||||||||| || || ||||| || |||||||| Sbjct 55441 TTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGAA 55382 Query 37601 AGCAAGAACATATTTTATAAAATGTCTTTCAT---CATTTGATAATTTTTTCCAATCATT 37657 ||||| ||||| ||||| ||||| |||| |||| || |||| ||| ||| Sbjct 55381 TGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATT---TAGCTTTTCCCAGTCAGC 55325 Query 37658 AATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTTATA 37717 || ||||| || |||||||| || | ||||| || ||||| |||| |||||| Sbjct 55324 TTGGTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCTTTATA 55265 Query 37718 CATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTAT 37764 ||| | ||||||||||| ||| | |||||| || || |||||||||| Sbjct 55264 CATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTAT 55218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592315422863440