Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05-
11] 186 sequences; 4,397,606 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq105 289 3e-73
>seq105
Length=68279
Score = 289 bits (320), Expect = 3e-73
Identities = 606/887 (68%), Gaps = 22/887 (2%)
Strand=Plus/Minus
Query 36886 TTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCT-AGTGATATATTT 36944
||| ||| || || || || | || || ||||||| |||| |||| ||||| ||
Sbjct 56090 TTTTATACTCACCTACACGCATCTCAAAGAAATTTG-CTTTTCTTCGCAGTGAAATTAGC 56032
Query 36945 TCCATAAAATCAAATGGATTAGATGTATTATATATAGTA-CTACATGATAATTCCTTCAG 37003
||||||||||| ||||| || | ||| || || | | || ||| || | | | ||
Sbjct 56031 TCCATAAAATCGAATGGGTTTGTTGTGTTGTAGACCTTTTCTTCATT-TAGTGCAATTAG 55973
Query 37004 AAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAG 37063
| || ||| || ||||| || ||||| | ||||| || |||| || || ||||
Sbjct 55972 TAACCGATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGATGCCTATTAA 55913
Query 37064 TTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTAT 37123
|| |||| |||||| | ||| |||||| || || || ||| ||||||
Sbjct 55912 AGAAACAGGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTCTAAAACTAT 55853
Query 37124 ATTAACAATAACTTCTT-CAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAA 37182
|| ||| ||||| || ||| | | | | || |||| | ||| ||||
Sbjct 55852 TTTCTTGATA--TTCTTACACTTGTTTATGAGGTGAGA-ATGTAAA----AGACAGGCAA 55800
Query 37183 AATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCA 37242
| ||||| || | ||||||||||| || |||| || ||||| || || | |||||||
Sbjct 55799 AGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGCA 55740
Query 37243 TTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTT 37302
| | ||||| || |||| ||| || |||| |||||| |||||||| ||||| || || |
Sbjct 55739 TAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATATTCCCT 55680
Query 37303 CAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA-TAATCAGAAATCCAt 37361
| || |||||| || || || | ||| |||| | ||| | || || |||||
Sbjct 55679 CTACACATGCAAAAGCAACTAGCC-TGTCTGCAAAGCTAGACTCCTTGTCTGATATCCAC 55621
Query 37362 ttttttGTCCAATCTGCCTT-TAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAG 37420
| | ||| |||||||| | |||| ||| ||| | || ||||| | || |
Sbjct 55620 CTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGG-AATATTCTCCATTGCCTGGAATAA 55562
Query 37421 AAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGA 37480
||||| |||||| || |||| | || || || || ||||||||||||||||| || |
Sbjct 55561 GAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACATCTCTGC 55502
Query 37481 GTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAAC 37540
||| || ||||| || || || || || || ||||| || || || || ||||||
Sbjct 55501 GTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGAAC 55442
Query 37541 ATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAA 37600
|| | |||||| | | ||||||||||||| || || ||||| || ||||||||
Sbjct 55441 TTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGAA 55382
Query 37601 AGCAAGAACATATTTTATAAAATGTCTTTCAT---CATTTGATAATTTTTTCCAATCATT 37657
||||| ||||| ||||| ||||| |||| |||| || |||| ||| |||
Sbjct 55381 TGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATT---TAGCTTTTCCCAGTCAGC 55325
Query 37658 AATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTTATA 37717
|| ||||| || |||||||| || | ||||| || ||||| |||| ||||||
Sbjct 55324 TTGGTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCTTTATA 55265
Query 37718 CATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTAT 37764
||| | ||||||||||| ||| | |||||| || || ||||||||||
Sbjct 55264 CATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTAT 55218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592315422863440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |