Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq105 156 8e-33 >seq105 Length=68279 Score = 156 bits (172), Expect = 8e-33 Identities = 382/574 (67%), Gaps = 10/574 (2%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||||||||| | ||| | ||||| || | |||||| ||| |||| ||||| ||| Sbjct 55806 CAGGCAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGA 55747 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || |||| || ||||||||||||| || || || ||||||||||| Sbjct 55746 CCTGGCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAAT 55687 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || ||||| || || || || ||||| ||| | || || | ||||||||| Sbjct 55686 ATTCCCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGAT 55627 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| ||| ||||||||||||||||| || || || || |||| || ||| || Sbjct 55626 ATCCACCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTGG 55567 Query 48371 ---AAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 |||| ||||| || | | ||| | ||||| | || ||| Sbjct 55566 AATAAGAAGTTCTT---TTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATAC 55510 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 ||||| | ||| | || ||||| || ||||| |||||||| || ||||| Sbjct 55509 ATCTCTGCGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTT 55450 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 | || ||||||| | || || || | | || ||||| || || |||||||| ||| Sbjct 55449 ATTTGAACTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCA 55390 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT--CC 48605 |||||||| ||||| |||| | || || | ||| || || | ||| || || Sbjct 55389 GCAAAGAATGCAAGTACATAGGAGATAAAGTGTCTCTCATT-TGCAT-TTAGCTTTTCCC 55332 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | | ||| || || ||| |||||||| |||||||||| || | ||| | Sbjct 55331 AGTCAGCTTGGTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCAT 55272 Query 48666 TTTTGTACATGCCCCATATGTCCGGATAGTCTAT 48699 ||| ||||| |||| || || ||| ||||| Sbjct 55271 CTTTATACATTGCCCAAATATCATGATGCTCTAT 55238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530634186240