Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq103 123 2e-22 seq106 111 1e-18 seq109 91.5 1e-12 >seq103 Length=70461 Score = 123 bits (136), Expect = 2e-22 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 480564 ACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCA 480623 |||||||||| |||||||||||| | || || |||| || ||||| ||| || Sbjct 50336 ACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGAAAGTGTTCTTCCATCCTCC 50277 Query 480624 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683 || || ||||| ||||| || | | |||||| || || || |||||||| |||||||| Sbjct 50276 AGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGGTATTCCTTCTTTGTCTTGT 50217 Query 480684 ATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 |||||| ||| ||| || || || ||| | || |||||| ||||| |||||| Sbjct 50216 ATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTACTTCAAGTGTAATGGTTTTA 50157 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| ||||| ||||| || || Sbjct 50156 CCAGTGAGTGTCTTTACGAATATCTG 50131 >seq106 Length=63987 Score = 111 bits (122), Expect = 1e-18 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 480561 AGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCT 480620 ||||||||||||| || || || || | || || |||| || ||||| |||| Sbjct 37658 AGTACAAGATGAATGGTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTTCCATCT 37599 Query 480621 TCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCT 480680 || ||||| ||||| ||||| || | | |||||| || ||||| |||||||||||||| Sbjct 37598 TCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCC 37539 Query 480681 TGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTT 480740 || |||||| ||| ||| || || || ||| | || ||| |||||||| || Sbjct 37538 TGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTACTTCCAGGGTAATTGTC 37479 Query 480741 TTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||| || || || || || || Sbjct 37478 TTACCAGTGAGTGTTTTTACAAATATCTG 37450 >seq109 Length=56162 Score = 91.5 bits (100), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || || ||||||||||||| ||||| || || | ||||| |||| || || || Sbjct 25000 AGTCGCAGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAGTCAGAAAGTGTCCTT 25059 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || || ||||| ||||| || || | ||||| || || || || ||||| Sbjct 25060 CCATCTTCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGTCGGGTGGTATCCCTTCT 25119 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 || || || |||||| |||||| || || | ||| | || ||| || ||| Sbjct 25120 TTATCCTGTATCTTTGCCTTGACATTCTCTATTGAGTCACTTGGTTCTACTTCCAGTGTA 25179 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||| ||||| || || Sbjct 25180 ATTGTCTTCCCAGTGAGTGTCTTCACGAATATCTG 25214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268171221557528