Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq35 91.5 2e-13 >seq35 Length=104599 Score = 91.5 bits (100), Expect = 2e-13 Identities = 486/767 (63%), Gaps = 26/767 (3%) Strand=Plus/Plus Query 78236 ATTAGAGGAACTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTATTCAATGCT 78295 |||| ||||| |||||| || |||| || ||||||||||| || || || |||| Sbjct 77937 ATTAAGGGAACCTTTGGTCATTCAAATGGGATAATTCCTATGCTGAGAGTGTTTGATGCC 77996 Query 78296 ACAGCACGCTATGTCAACCAAGCGGGTCGTAGGAAG---GGGTCATTCGCTATGTACCTT 78352 ||| || ||||| |||| | ||| || || | || ||| | | | |||| || Sbjct 77997 ACATCAAAGTATGTTGACCAGGGAGGTAATAAGAGGCCTGGATCAATTGTTGTGTATATT 78056 Query 78353 GAACCTTGGCACGCCGATGTAATGGATTTTTTGGAACTTCGTCTCAACCAGGGTGACGAG 78412 || || |||||| || || | || ||||| || | | || |||| | || Sbjct 78057 GAGCCATGGCACAGAGACATATTTGACTTTTTAGATTTGAGAAAGAATACGGGTAAGGAA 78116 Query 78413 GAAGCTCGATGCAGGGATTTATTCACTGCTATGTGGATTCCGGATCTTTTTATGAAGAGA 78472 ||| | || |||| ||| | | ||| | || || | |||||||||||| Sbjct 78117 GAAATGAGGGCAAGAAATTTGTTCTTAGGACTATGGGTACCTGACTTATTTATGAAGAGA 78176 Query 78473 GTTGAGGAAGGAGGTAAATGGTCTCTTTTCTGTCCAGATAAGACTAAGGGTCTTTCAGAT 78532 ||||| |||| || | ||| | || || || || ||| | | || || || || Sbjct 78177 GTTGAAGAAGACGGGGATTGGGCGCTATTTTGCCCCAATATGGCAAAAGGCCTGCACGAG 78236 Query 78533 GTATACGGGGAAGAATTCGAAAAATTGTACACTAAATACGAAGAGGAAGGTCTCGCTATT 78592 ||||| || ||||| ||| | |||| | |||||| | |||| | Sbjct 78237 AAGTACGGAGATGAATTTGAAGAGCTGTATGTACAGTACGAAAAAGAAGAGAGAATTGAG 78296 Query 78593 AAGACAATTGATGCATCT-GAA--CTATGGAAAGCTATTATCAAAAGTCAAACA--GAGA 78647 |||| | | | || | ||| || ||||| || ||| | | | || | | || | Sbjct 78297 AAGAAGGTGGTTCCAGCAAGAAAGCTGTGGAAGGCAATTCTTGA--GGCAGAGATTGAAA 78354 Query 78648 CCGGCACCCCGTATATGCTATACAAAGACAGCTGTAACAGAAAGTCTAACCAAAAGAACC 78707 | || ||||| || || || ||||||||||||||||||||| ||||| |||| | Sbjct 78355 CAGGTGTACCGTACATTCTCTATAAAGACAGCTGTAACAGAAAGAGCAACCAGCAGAATC 78414 Query 78708 TAGGTGTCATCAA---AAGCTCTAACCTTTGCACAGAAATTCTGGAATACACGGATAAGA 78764 | || || ||||| |||| ||| | || | || ||| | || ||||| ||| | Sbjct 78415 TTGGAGTGATCAAGGGAAGC---AACTTGTGTGCTGAGATTGTTGAGTACACAGATCCAA 78471 Query 78765 ATGAAACAGCTGTATGTAATCTAGGGTCTATCGCTCTACCAAAGTTTGTTGATCGAGAAT 78824 |||||| || || ||||| || | || | || || |||| | |||| || Sbjct 78472 ATGAAATTGCGGTGTGTAACCTGGCATCACTTGCACTTCCAACATACATTGA-----AAA 78526 Query 78825 TAAAGACATTTGATTATTCA--AAGCTCCACGAAATTACAAAAATCGTAACTAAAAATTT 78882 || || |||| | |||| ||||| | || | ||||||| ||| | ||||| | Sbjct 78527 CAATGA-ATTTAA--CTTCAATAAGCTAAAGGAGGTCGCAAAAATAGTAGCCAAAAACCT 78583 Query 78883 AAATCGTGTAATTGACCGTAACTACTACCCAGTCGAGACTGCTAAATATTCTAATATGAA 78942 || | ||||| ||| | |||||| | || ||||| ||||||||||||| Sbjct 78584 GAACAAAATCATTGATGTAAACAAATACCCATTAGAACAAGCTAAGAATTCTAATATGAA 78643 Query 78943 ACATAGACCAATTGGTCTAGGTGTTCAAGGATTGGCAGATGTATTCA 78989 || | || || || | ||||| || || | |||||||||| || Sbjct 78644 GCACCGCCCTATAGGAATGGGTGTACAGGGGCTAGCAGATGTATACA 78690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657860870469920