Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq105 199 6e-46 seq103 105 1e-17 seq106 84.2 3e-11 >seq105 Length=68279 Score = 199 bits (220), Expect = 6e-46 Identities = 562/855 (66%), Gaps = 17/855 (2%) Strand=Plus/Minus Query 17886 TCTCGAAGAAATTTGTCTTTCCTTC-CAATGATATTAAATTCATAAAATCAAATGGATTA 17944 |||| |||||||||| |||| |||| || ||| |||| | ||||||||| ||||| || Sbjct 56069 TCTCAAAGAAATTTG-CTTTTCTTCGCAGTGAAATTAGCTCCATAAAATCGAATGGGTTT 56011 Query 17945 GTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCTATCTGCTACAAATTCG 18004 || || || || ||||||| ||| | | || ||| | |||||| ||||| || Sbjct 56010 GTTGTGTTGTAGACCTTTTCTTCATTTAGTGCAATTAGTAACCGATCTGCCACAAACTCA 55951 Query 18005 ACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAATA 18064 | || || |||| | || | || || |||| || | ||| || |||||| | Sbjct 55950 ATGTACTGGCACATAGAGTCTGAGTTGATGCCTATTAAAGAAACAGGAAGTGCATCAGTT 55891 Query 18065 ATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTTTGGC 18124 | ||| ||||| || |||||||| | |||| | ||| ||| || | ||| | | Sbjct 55890 AAAAACTCTTTTTCAATCTCAACTGCCTCTAAAACTAT-TTTCTTG----ATATTCTTAC 55836 Query 18125 AATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGTAAACCTTCA 18184 | || ||| || | | | ||| ||| | ||| ||||| ||| ||| | |||||| Sbjct 55835 ACTTGTTTA----TGAGGTGAGAATGTAAAAGACAGGCAAAGTCACAGTGAAGTCCTTCA 55780 Query 18185 TCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttttAGC 18244 |||||| || | |||||| || || | || ||||| | ||||| || || ||| Sbjct 55779 TCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGCATAAGGCCTCTCTTCTTAAGC 55720 Query 18245 CAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCTATT 18304 || || || ||||| || | ||| |||||||| ||||| || || || || || | | Sbjct 55719 CAGAAAATTGATGCAAATGATCCAGAGAAGAATATTCCCTCTACACATGCAAAAGCAACT 55660 Query 18305 AATCTTTCAGCAAAACTGTATTTATTGCTCAG-TATCCATTTTTGTGCCCATTCT-CCTT 18362 | || || ||||| || | | ||| || | |||||| | | ||||| ||| |||| Sbjct 55659 AGCCTGTCTGCAAAGCTAGACTCCTTG-TCTGATATCCACCTAAGGGCCCAGTCTGCCTT 55601 Query 18363 NNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAAT 18422 |||| || ||| |||| || || | || || | |||||| | || Sbjct 55600 CTTTTTTATTACA-GGAATATTCTCCATTGCCTGGAATAAGAAGTTCTTTTCTGCAGTAT 55542 Query 18423 CTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTA 18482 | || || || ||||| |||| ||| |||||| || | |||||| |||| || | Sbjct 55541 CCTTGATGTAGGTGTCTATTAGTAAACTATACATCTCTGCGTGTATGTTTTCTATCATAA 55482 Query 18483 TCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTA 18542 | || || | || || |||| |||||| ||||| || | ||| ||||| | Sbjct 55481 TTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGAACTTCTGAAGCAAACCTTTCAA 55422 Query 18543 CCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGA 18602 | || || ||||| || || || || | | || || ||||| | ||||| || | Sbjct 55421 CTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGAATGCAAGTACATAGGAGATAA 55362 Query 18603 AATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGATAGATCAACTT 18662 | ||| | ||||| | || || || | ||| ||| || || ||||| | ||||||| Sbjct 55361 AGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTCAGCTTGGTCATTTGACAAGTCAACTT 55302 Query 18663 CTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTTATAAATATCTTCATGTT 18722 |||| | ||||| || || | || | ||| |||||| ||||||| | ||| | Sbjct 55301 CTTCTGCAGTCCAGAATACTGCCACTGCATCTTTATACATTGCCCAAATATCATGATGCT 55242 Query 18723 GTATAGG--AAATAA 18735 ||| || |||||| Sbjct 55241 CTATTGGGAAAATAA 55227 >seq103 Length=70461 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | || ||| | ||||| ||||| |||||| | ||||| ||| | Sbjct 50128 ATGCAGATATTCGTAAAGACACTCACTGGTAAAACCATTACACTTGAAGTAGAACCAAGT 50187 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| || |||||||| |||||||| ||||| || || ||| Sbjct 50188 GACACAATAGAGAATGTAAAAGCAAAGATACAAGACAAAGAAGGAATACCACCCGACCAA 50247 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | ||| || || ||||| || ||| ||||| | || || || || Sbjct 50248 CAAAGATTAATCTTTGCAGGAAAACAGCTGGAGGATGGAAGAACACTTTCTGACTACAAC 50307 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAA 156055 ||| ||||| || ||||| | || |||||| | ||||| || | ||| Sbjct 50308 ATACAAAAAGAAAGTACAATTCATCTTGTCTTAAGACTGAGAGGAGGAGGAAA 50360 >seq106 Length=63987 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | |||||| | ||||| || || ||||| | ||||| ||| Sbjct 37446 AATGCAGATATTTGTAAAAACACTCACTGGTAAGACAATTACCCTGGAAGTAGAACCAAG 37505 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || || || ||| || ||||| || || ||||| || ||||| || || Sbjct 37506 TGACACAATAGAGAATGTAAAAGCAAAGATACAGGACAAGGAAGGAATCCCTCCCGACCA 37565 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||| || | ||| || || || || |||||| ||||| | || || || || Sbjct 37566 ACAAAGATTAATCTTTGCAGGAAAACAACTGGAAGATGGAAGAACCCTTTCTGACTACAA 37625 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGT 156052 || || ||| || ||||| | || | ||| | ||||| || || Sbjct 37626 CATCCAGAAGGAGAGCACCATTCATCTTGTACTGAGACTGAGAGGAGGAGT 37676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870298397600