Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq105 167 5e-36 seq103 158 2e-33 seq106 138 2e-27 seq109 131 3e-25 >seq105 Length=68279 Score = 167 bits (184), Expect = 5e-36 Identities = 533/828 (64%), Gaps = 26/828 (3%) Strand=Plus/Minus Query 49580 TGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA 49639 ||| |||| | ||||||||| ||||| ||| | || || || |||||| | | | Sbjct 56041 TGAAATTAGCTCCATAAAATCGAATGGGTTTGTTGTGTTGTAGACCTTTTCTTCATTTAG 55982 Query 49640 TACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCAT 49699 | || || ||| | ||| || ||||| |||| || || |||| | || | || || Sbjct 55981 TGCAATTAGTAACCGATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGAT 55922 Query 49700 ACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttg 49759 || | ||| || || | ||||||| | ||| |||||||| || || || || | Sbjct 55921 GCCTATTAAAGAAACAGGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTC 55862 Query 49760 tttaattatcataattatattattttttgataat-ttatatttaat-atga--ttcgcat 49815 | || ||| ||| |||||| | ||| | || | |||| | | || Sbjct 55861 TAAAACTAT-------------TTTCTTGATATTCTTACACTTGTTTATGAGGTGAGAAT 55815 Query 49816 atattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAA 49875 || | ||| ||||| ||| || | || || || || || | || ||| | Sbjct 55814 GTAAAAGACAGGCAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGA 55755 Query 49876 AAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAG 49935 |||| | |||||||| | |||||||| |||||||| || ||||||||||| | || Sbjct 55754 AAGTAAGACCTGGCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAG 55695 Query 49936 AAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTAT 49995 | |||||||| ||||| ||||| ||||| || | || || || |||| | | | | Sbjct 55694 AGAAGAATATTCCCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCT 55635 Query 49996 CATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 50055 ||| ||||||| | | ||||| ||||| || ||||| || ||| ||||| || | Sbjct 55634 TGTCTGATATCCACCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCA 55575 Query 50056 TAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAG 50115 | || | ||||| || ||||| |||| |||| Sbjct 55574 TTGCCTGGAATAAGAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAAC 55515 Query 50116 AATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTT 50175 |||||| || | |||| ||| || ||||| ||| || || |||||| | Sbjct 55514 TATACATCTCTGCGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCT 55455 Query 50176 CTGAATA-CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 50234 | | || |||||||| ||| || | ||||||||| || ||| |||||| ||||| Sbjct 55454 C-GCTTATTTGAACTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCT 55396 Query 50235 GATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 50294 || || || |||||||| | || || ||||| ||| | ||||| | |||| ||| Sbjct 55395 GAGGCAGCAAAGAATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTT 55336 Query 50295 TCCCA---AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351 ||||| || || | || ||||| || || ||||||||| ||||| ||| ||| Sbjct 55335 TCCCAGTCAGCTT---GGTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCC 55279 Query 50352 ACGGATTTTTTATACATTTGATATATATCAAAATGTTC-AATGGGAAA 50398 || | | |||||||||| | |||||| ||| || | ||||||| Sbjct 55278 ACTGCATCTTTATACATTGCCCAAATATCATGATGCTCTATTGGGAAA 55231 >seq103 Length=70461 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| || | ||| || | ||| | ||| ||||| || || || ||||| Sbjct 50354 CCTCCTCTCAGTCTTAAGACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGAA 50295 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| | |||| |||| ||||| || |||||||||||||| ||||| || |||||| Sbjct 50294 AGTGTTCTTCCATCCTCCAGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGGT 50235 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||||||||| |||||||| || ||||||||| ||| | || | ||||||| Sbjct 50234 ATTCCTTCTTTGTCTTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTACT 50175 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||||||||| | ||| || | ||||||||||| Sbjct 50174 TCAAGTGTAATGGTTTTACCAGTGAGTGTCTTTACGAATATCTGCAT 50128 >seq106 Length=63987 Score = 138 bits (152), Expect = 2e-27 Identities = 141/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || ||||| | |||| | |||| |||| |||||| || |||||||||||||| Sbjct 37629 GATGTTGTAGTCAGAAAGGGTTCTTCCATCTTCCAGTTGTTTTCCTGCAAAGATTAATCT 37570 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||| || || || |||||||| || || ||||| || ||||||||| ||| | Sbjct 37569 TTGTTGGTCGGGAGGGATTCCTTCCTTGTCCTGTATCTTTGCTTTTACATTCTCTATTGT 37510 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || | ||||||||| || ||||| || |||||||| | |||||| | ||||||||| Sbjct 37509 GTCACTTGGTTCTACTTCCAGGGTAATTGTCTTACCAGTGAGTGTTTTTACAAATATCTG 37450 Query 192534 CATT 192537 |||| Sbjct 37449 CATT 37446 >seq109 Length=56162 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| || || | ||| | ||| | ||| ||| || || ||||| ||||| Sbjct 24991 CCCCCTCTCAGTCGCAGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAGTCAGAA 25050 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| | | |||| || | ||||| || |||||||||| ||||||||| || |||||| Sbjct 25051 AGTGTCCTTCCATCTTCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGTCGGGTGGT 25110 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||||||||| ||||| || || ||||| ||| || || | ||||||| Sbjct 25111 ATCCCTTCTTTATCCTGTATCTTTGCCTTGACATTCTCTATTGAGTCACTTGGTTCTACT 25170 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || ||||| | ||| || | ||||||||||| Sbjct 25171 TCCAGTGTAATTGTCTTCCCAGTGAGTGTCTTCACGAATATCTGCAT 25217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984477653861100