Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq103 152 9e-32 seq105 134 2e-26 seq106 123 5e-23 seq109 116 7e-21 >seq103 Length=70461 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| |||| ||| || | ||| | ||| ||||| || || || || || Sbjct 50354 CCTCCTCTCAGTCTTAAGACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGAA 50295 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | | || |||| ||||| || ||||| |||||||| |||||||| |||||| Sbjct 50294 AGTGTTCTTCCATCCTCCAGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGGT 50235 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||||||||| |||||||| || ||||||||| ||| || || | ||||||| Sbjct 50234 ATTCCTTCTTTGTCTTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTACT 50175 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||||||||||||| | ||| || | |||||||||||| Sbjct 50174 TCAAGTGTAATGGTTTTACCAGTGAGTGTCTTTACGAATATCTGCAT 50128 >seq105 Length=68279 Score = 134 bits (148), Expect = 2e-26 Identities = 544/867 (63%), Gaps = 35/867 (4%) Strand=Plus/Minus Query 38856 TCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTG 38915 || || || |||| ||||| | | ||| |||| | ||||||||| ||||| ||| | Sbjct 56067 TCAAAGAAATTTGCTTTTCTTCGCAGTGAAATTAGCTCCATAAAATCGAATGGGTTTGTT 56008 Query 38916 GTATTATAATATTTTTCTCCTATCAATACATATAATAATCTATCGGCCACAAATTCAACA 38975 || || || |||||| | | | | || || ||| | ||| |||||||| |||| Sbjct 56007 GTGTTGTAGACCTTTTCTTCATTTAGTGCAATTAGTAACCGATCTGCCACAAACTCAATG 55948 Query 38976 TATTGTAACATTAATTCACAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATA 39035 || || |||| | || | || || || | ||| || || | ||||||| | | Sbjct 55947 TACTGGCACATAGAGTCTGAGTTGATGCCTATTAAAGAAACAGGAAGTGCATCAGTTAAA 55888 Query 39036 AATTCtttttctatttctacagcttgtttaattatcataattatattattttttgataat 39095 || |||||||| || || || || | | || ||| ||| |||||| | Sbjct 55887 AACTCTTTTTCAATCTCAACTGCCTCTAAAACTAT-------------TTTCTTGATATT 55841 Query 39096 -ttatatttaat-atga--ttcgcatataGTAAACATGCAAAATCCGTATGTAAACCTTC 39151 ||| | || | |||| | | || || | ||| ||||| || || | ||||| Sbjct 55840 CTTACACTTGTTTATGAGGTGAGAATGTAAAAGACAGGCAAAGTCACAGTGAAGTCCTTC 55781 Query 39152 GTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAG 39211 || || || | || ||| ||||| | |||||||| | |||||||| ||||| Sbjct 55780 ATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGCATAAGGCCTCTCTTCTTAAG 55721 Query 39212 CCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTAT 39271 ||| || ||||||||||| | ||| |||||||| ||||| ||||| ||||| || | Sbjct 55720 CCAGAAAATTGATGCAAATGATCCAGAGAAGAATATTCCCTCTACACATGCAAAAGCAAC 55661 Query 39272 TATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCttt 39331 || || || |||| | | | | ||| | ||||| | | |||||| ||||| || Sbjct 55660 TAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGATATCCACCTAAGGGCCCAGTCTGCCTT 55601 Query 39332 ttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATTCATNNNNNNNNNNNNNNNN 39391 ||||| || ||| ||||| || || || | ||||| | Sbjct 55600 CTTTTTTATTACAGGAATATTCTCCATTGCCTGGAATAAGAAGTTCTTTTCTGCAGTATC 55541 Query 39392 NNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAGAATGTACAGCTTCCATAGCTAT 39451 | |||||| || | |||| ||| || || Sbjct 55540 CTTGATGTAGGTGTCTATTAGTAAACTATACATCTCTGCGTGTATGTTTTCTATCATAAT 55481 Query 39452 TTGAAAT-----GAATAAAATTGCCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGT 39506 ||| ||| ||| | |||||| |||| | |||||||| ||| || | | Sbjct 55480 TTGGAATCCGTAGAAACATCTTGCCTCGCTTAT-----TTGAACTTCTGAAGCAAACCTT 55426 Query 39507 TCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACATATTTA 39566 |||||||| || ||| |||||| ||||| || || || |||||||| | ||||| Sbjct 55425 TCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGAATGCAAGTACATAGGAG 55366 Query 39567 ATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA---AGATTCAAGATCGTTTGATAAA 39623 ||||| ||| | ||||| | |||| |||||||| || || | || ||||| || Sbjct 55365 ATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTCAGCTT---GGTCATTTGACAAG 55309 Query 39624 TCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTATACATTTGATATATATCA 39683 || ||||||||| ||||| || ||| || | | |||||||||| | |||||| Sbjct 55308 TCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCTTTATACATTGCCCAAATATCA 55249 Query 39684 AAATGTTCAAT--GGGAAATAACACAT 39708 ||| || || || |||||||| || Sbjct 55248 TGATGCTCTATTGGGAAAATAACAAAT 55222 >seq106 Length=63987 Score = 123 bits (136), Expect = 5e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| |||||| || ||||| |||||||| |||||||| || || |||||||| || Sbjct 37601 TCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTG 37542 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || ||||| || ||||||||| ||| || || | ||||||||| || ||||| Sbjct 37541 TCCTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTACTTCCAGGGTAATT 37482 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || |||||||| | |||||| | |||||||||||| Sbjct 37481 GTCTTACCAGTGAGTGTTTTTACAAATATCTGCATT 37446 >seq109 Length=56162 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| ||||| | ||| | ||| | ||| ||| || || ||||| || || Sbjct 24991 CCCCCTCTCAGTCGCAGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAGTCAGAA 25050 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | | | | || || | ||||| || ||||| |||| |||||||||||| |||||| Sbjct 25051 AGTGTCCTTCCATCTTCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGTCGGGTGGT 25110 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||||||||| ||||| || || ||||| ||| | || | ||||||| Sbjct 25111 ATCCCTTCTTTATCCTGTATCTTTGCCTTGACATTCTCTATTGAGTCACTTGGTTCTACT 25170 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || ||||| | ||| || | |||||||||||| Sbjct 25171 TCCAGTGTAATTGTCTTCCCAGTGAGTGTCTTCACGAATATCTGCAT 25217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905133895558800