Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq105 145 2e-29 seq1 111 5e-19 >seq105 Length=68279 Score = 145 bits (160), Expect = 2e-29 Identities = 396/593 (67%), Gaps = 10/593 (2%) Strand=Plus/Plus Query 133070 AATAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAA-CA 133128 ||||| |||||||| |||||||| || | | || |||||| ||||||||| | || Sbjct 55217 AATAGATTTGTTATTTTCCCAATAGAGCATCATGATATTTGGGCAATGTATAAAGATGCA 55276 Query 133129 GCAAGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGA 133188 | | | ||| |||||| || ||||| || || || || |||| ||| ||||||| Sbjct 55277 GTGGCAGT-ATTCTGGACTGCAGAAGAAGTTGACTTGTCAAATGACCAAGCTGACTGGGA 55335 Query 133189 AGCCCTTACTGGGGATGAAAAACATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGA 133247 | || | || |||| | ||| ||||| || |||| || || || |||||||| Sbjct 55336 AAAGCTAAATGCAAATGAGAGACACTTTATCTCCTATGTACTT-GCATTCTTTGCTGCCT 55394 Query 133248 GTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCG 133307 ||||| ||||| |||||| |||| | ||||| |||||||||| | || Sbjct 55395 CAGATGGAATTGTAAATGAAAACTTAGTTGAAAGGTTTGCTTCAGAAGTTCAAATAAGCG 55454 Query 133308 AAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATT 133367 | || | || || || | || ||| ||| ||||| || || | | ||| Sbjct 55455 AGGCAAGATGTTTCTACGGATTCCAAATTATGATAGAAAACATACACGCAGAGATGTATA 55514 Query 133368 CTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCA 133427 | ||||| || || |||||||| ||||| | | ||| || ||||| | || | Sbjct 55515 GTTTACTAATAGACACCTACATCAAGGATACTGCAGAAAAGAACTTCTTATTCCAGGCAA 55574 Query 133428 TTAGCGAATTTCCTTGTATTAAAAA-GAAATCTGACTGGGCTATTAAATGGATCCAGGAC 133486 | | |||| | | |||| |||||| ||| | |||||||| ||| ||||| ||| Sbjct 55575 TG-GAGAATATTCCTGTAATAAAAAAGAAGGCAGACTGGGCCCTTAGGTGGATATCAGAC 55633 Query 133487 AAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGC-TGTAGTAGAGGGCAttttttt 133545 ||| | || ||||| | || ||||||||||| ||| |||||||| || || || Sbjct 55634 AAGGAGTCTAGCTTTGCAGACAGGCTAGTTGCTTTTGCATGT-GTAGAGGGAATATTCTT 55692 Query 133546 CAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGT 133604 | ||| | || ||| || ||||| |||||||| ||| | || || | || || || Sbjct 55693 CTCTGGATCATT-TGCATCAATTTTCTGGCTTAAGAAGAGAGGCCTTATGCCAGGTCTTA 55751 Query 133605 GTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 ||| |||||||| || || || || || | ||||||| || |||||| Sbjct 55752 CTTTCTCTAACGAGCTGATCAGCAGAGATGAAGGACTTCACTGTGACTTTGCC 55804 >seq1 Length=377182 Score = 111 bits (122), Expect = 5e-19 Identities = 287/430 (67%), Gaps = 12/430 (3%) Strand=Plus/Minus Query 59932 ATTCTCTAAATATTGAATAATTTG--AATCGGATTATGGGACATAATATCTGTGCTAAAA 59989 ||||||| || ||| || | || ||||||||||| || ||| ||| || | Sbjct 323115 ATTCTCTTAACATTATCTACTATGTCAATCGGATTATATGATGGAATGCATGTACTCCAT 323056 Query 59990 CCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATAA 60049 || ||||| ||||| | || |||||| | |||| |||||| |||||||| || || Sbjct 323055 CCTGTACCGATACCTTCTGATCCATTCACTAGAACCATCGGTATAATTGGAATGTACATG 322996 Query 60050 ACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATTTCG 60109 |||| || || | | ||||| |||||||| |||||| | |||||| ||| Sbjct 322995 TCTGGTTCTACCATTAGATTGTCATCCTTTAAGTAGTTTAAAAGATGGTCGTCTTGTTCC 322936 Query 60110 GGAAATATAGCCCGAGTAATCTTGGATAATTGTG-TGAAAATATACCTCTCGGA--TGCT 60166 | ||||| | || | |||| | | ||| | ||||||| || ||| ||| Sbjct 322935 CGGAATATGTATCTGGT--TATTGG-TTGTAGTGCAGTAAATATATACCTGGGACTGGCT 322879 Query 60167 GCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATG 60226 || ||||| |||||| | ||| || ||||| ||||| | ||||| || ||| ||| Sbjct 322878 GCATCCTTTCCACCCTGTAAACGAGTCCCAAACTGTCCAATGGGCTGTAACAGAGGAATA 322819 Query 60227 TTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAG--CACCATTTAAACTGGCTT 60284 || || || || || | | || || ||| ||||| | | || |||||| || Sbjct 322818 TTATTCGATCCAACATAGTCCTGGGCAAGATTTACAATTGTTGAGCA--TAAACTCTGTT 322761 Query 60285 CACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTT 60344 | || |||||||| | || || ||||||||||| || | ||||| ||||| |||| Sbjct 322760 CTCCATGATGATAAGCCGAGTGCTCTGAAACATAACCTGCCAGCTGTGCTACTTTTATTT 322701 Query 60345 CGGAGTGGAG 60354 | || | ||| Sbjct 322700 CAGACTTGAG 322691 Score = 91.5 bits (100), Expect = 4e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 252557 CATACATACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGAT 252616 ||||||| || | |||||||| |||||||||||||| || || ||||| || ||||| | Sbjct 186981 CATACATCCCCATGGCCTGCTTACCCATAGCACTCTGATATGTGTTTCTTGGTGACTGGT 187040 Query 252617 TGTTTTCCGGGAAAGGAATGCATGATGCTACA-ACACCGAAGATAGTGCTTGGGTGAATT 252675 ||| || |||||||| | |||||| ||| ||||| | ||||| || || ||| Sbjct 187041 TGTGGTCTGGGAAAGGCACCACTGATGC-ACATACACCAAGCATAGTAGCAGGCTGTATT 187099 Query 252676 TCACAGTGACTGTA 252689 |||||||| |||| Sbjct 187100 TCACAGTGGGTGTA 187113 Score = 87.8 bits (96), Expect = 5e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| ||||| | ||| || ||||| || ||||| ||||||||||| ||| | | ||||| Sbjct 186294 CGATCGTCATTCTACTCGGGATAGCGTGCGGATTAATGATGATGTCTGGTGTAATTCCAT 186353 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATAGTTCCCTTTTGTCCGT 251962 | || ||||| ||||| |||| | || || | ||||| ||||||||||| |||| Sbjct 186354 CTGCTGTGAATGGCATGTCCTCTGGGGAAAGCATAATACCAATTGTTCCCTTTTGCCCGT 186413 Query 251963 G 251963 | Sbjct 186414 G 186414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814092474682