Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq106 145 5e-30 seq109 113 3e-20 >seq106 Length=63987 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| |||| ||||| || || |||||||||||||||||||| ||||| ||||| || Sbjct 37674 TCCTCCTCTCAGTCTCAGTACAAGATGAATGGTGCTCTCCTTCTGGATGTTGTAGTCAGA 37615 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||| | | |||| |||||||| ||||| || ||||| | || ||| ||||| | || Sbjct 37614 AAGGGTTCTTCCATCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGG 37555 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | || |||||||| | ||| ||| ||| || |||| | ||| | | || || Sbjct 37554 GATTCCTTCCTTGTCCTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTAC 37495 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| || ||||| || ||||| || |||||||| |||||||| Sbjct 37494 TTCCAGGGTAATTGTCTTACCAGTGAGTGTTTTTACAAATATCTGCAT 37447 >seq109 Length=56162 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 34746 CATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGT 34805 || |||| || |||| | ||| || || ||||| || ||||||||||| |||||||||| Sbjct 24986 CACTTCCCCCTCTCAGTCGCAGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAGT 25045 Query 34806 CCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTT 34865 | || || | | |||| || || || ||||| || ||||| |||| || ||||| Sbjct 25046 CAGAAAGTGTCCTTCCATCTTCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGTCGG 25105 Query 34866 GCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCT 34925 | || | ||| || || || | ||| ||| ||||| |||| || ||| | | | Sbjct 25106 GTGGTATCCCTTCTTTATCCTGTATCTTTGCCTTGACATTCTCTATTGAGTCACTTGGTT 25165 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || | || || ||||| || ||||| ||||| || || |||||||| Sbjct 25166 CTACTTCCAGTGTAATTGTCTTCCCAGTGAGTGTCTTCACGAATATCTGCAT 25217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692061695134