Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq106 190 4e-43 seq109 176 9e-39 seq103 176 9e-39 >seq106 Length=63987 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||| | ||| || | || | || || ||||| || || || ||||| Sbjct 37673 CCTCCTCTCAGTCTCAGTACAAGATGAATGGTGCTCTCCTTCTGGATGTTGTAGTCAGAA 37614 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||| || ||||| ||||||||||| |||||||||| ||||||||| || ||||| Sbjct 37613 AGGGTTCTTCCATCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGGG 37554 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||||||||||||||| || || || ||| | ||||||||| Sbjct 37553 ATTCCTTCCTTGTCCTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTACT 37494 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || ||||| || || | || |||||||||||||||||| Sbjct 37493 TCCAGGGTAATTGTCTTACCAGTGAGTGTTTTTACAAATATCTGCATT 37446 >seq109 Length=56162 Score = 176 bits (194), Expect = 9e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82581 CTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCA 82640 || || ||||||| ||||| || | || | ||| || |||||||| ||||| ||| Sbjct 24988 CTTCCCCCTCTCAGTCGCAGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAGTCA 25047 Query 82641 GATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700 || || | || || |||||||| |||||||| |||||||||||||| ||||| || || Sbjct 25048 GAAAGTGTCCTTCCATCTTCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGTCGGGT 25107 Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 ||||| ||||| ||||| || |||||||| || ||||| || || | ||| | |||||| Sbjct 25108 GGTATCCCTTCTTTATCCTGTATCTTTGCCTTGACATTCTCTATTGAGTCACTTGGTTCT 25167 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || ||||| || || | ||||| || ||||||||||| Sbjct 25168 ACTTCCAGTGTAATTGTCTTCCCAGTGAGTGTCTTCACGAATATCTGCAT 25217 >seq103 Length=70461 Score = 176 bits (194), Expect = 9e-39 Identities = 154/192 (80%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 82619 TTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 82678 |||||| ||||| || || ||||| || |||| || || || || |||||||| ||||| Sbjct 50319 TTCTTTTTGTATGTTGTAGTCAGAAAGTGTTCTTCCATCCTCCAGCTGTTTTCCTGCAAA 50260 Query 82679 GATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATT 82738 ||||| ||||||||| || || ||||||||||| || ||||| ||||||||||||||||| Sbjct 50259 GATTAATCTTTGTTGGTCGGGTGGTATTCCTTCTTTGTCTTGTATCTTTGCTTTTACATT 50200 Query 82739 TTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 || || || ||| | ||||||||||| | || || || || || || | |||||||| Sbjct 50199 CTCTATTGTGTCACTTGGTTCTACTTCAAGTGTAATGGTTTTACCAGTGAGTGTCTTTAC 50140 Query 82799 AAATATCTGCAT 82810 ||||||||||| Sbjct 50139 GAATATCTGCAT 50128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981824860183054