Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1 114 3e-20 >seq1 Length=377182 Score = 114 bits (126), Expect = 3e-20 Identities = 224/321 (70%), Gaps = 19/321 (6%) Strand=Plus/Plus Query 279804 AAGAA-TTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATC-GTTCTAT 279861 ||||| |||||||||| |||| | |||||||| || | |||| | ||| | || || Sbjct 322565 AAGAACTTTATTGATAGAGAATTAATCCATTTCTCACTTGCTGATAAT-ATCAGGTCGAT 322623 Query 279862 TCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAA 279921 |||| || |||| ||||| |||| ||| ||||||||||||||| | | ||||||| || Sbjct 322624 TCCTAATGTAATTGATGGGATGAAGCCTGGACAGCGTAAGATTATTTACTGTTGTTTTAA 322683 Query 279922 AAGAAAATTGGTAAAG---GAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACA 279978 || | | | ||| ||||| || || ||| | ||||||||||||||||| || Sbjct 322684 GAGGCA---GCTCAAGTCTGAAATAAAAGTAGCACAGCTGGCAGGTTATGTTTCAGAGCA 322740 Query 279979 TGCAGGTTATCATCACGGTGA--AGCGTCTCT--TCAAGGTGCTATTGTAGGTCTTGCCC 280034 | | ||||||||| || || || || | | |||| | |||||| |||||||| Sbjct 322741 CTCGGCTTATCATCATGGAGAACAGAGTTTATGCTCAA----CAATTGTAAATCTTGCCC 322796 Query 280035 AAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCA-CCAAATGGTCAATTTGGTTCT 280093 | || | | | | || || || | |||| || || || | ||| || ||||| || Sbjct 322797 AGGACTATGTTGGATCGAATAATATTCCTCTG-TTACAGCCCATTGGACAGTTTGGGACT 322855 Query 280094 CGTATTCACAATGGAAAAGAT 280114 ||| | || |||||| ||| Sbjct 322856 CGTTTACAGGGTGGAAAGGAT 322876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186809971676746