Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq103 114 8e-21 seq106 93.3 3e-14 >seq103 Length=70461 Score = 114 bits (126), Expect = 8e-21 Identities = 169/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| | ||| || | ||| | || || ||||||||||||||||| || || Sbjct 50354 CCTCCTCTCAGTCTTAAGACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGAA 50295 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || |||| |||||||| ||||| || || | || || || | || Sbjct 50294 AGTGTTCTTCCATCCTCCAGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGGT 50235 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || || || |||| || | ||||| |||| ||| || Sbjct 50234 ATTCCTTCTTTGTCTTGTATCTT-TGCTTTTACATTCTCTATTGTGTCACTTGGTTCTAC 50176 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGT 33758 |||| || || |||||||| || | || ||||| || |||||||| | ||| || Sbjct 50175 TTCAAGTGTAATGGTTTTACCAGTGAGTGTCTTTACGAATATCTGCATGGCTGGGGT 50119 >seq106 Length=63987 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 33553 GTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCG 33612 |||||||| || || |||||||| || || || || | | | || |||| ||||||||| Sbjct 37643 GTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTTCCATCTTCCAGTTGTTTTCCT 37584 Query 33613 GCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTC 33672 ||||| || || | || || || | || | ||||| ||||| || || || || Sbjct 37583 GCAAAGATTAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCCTGTATCTT-TGCTTT 37525 Query 33673 AACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGT 33731 |||| || | ||||| |||| ||| || || | || || || ||||| || | || Sbjct 37524 TACATTCTCTATTGTGTCACTTGGTTCTACTTCCAGGGTAATTGTCTTACCAGTGAGTGT 37465 Query 33732 TTTTACAAAGATCTGCAT 33749 ||||||||| |||||||| Sbjct 37464 TTTTACAAATATCTGCAT 37447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703254869120