Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq106 109 1e-18 seq103 104 6e-17 seq109 91.5 3e-13 >seq106 Length=63987 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| ||||| || || || || || ||||||| ||| |||| Sbjct 37450 CAGATATTTGTAAAAACACTCACTGGTAAGACAATTACCCTGGAAGTAGAACCAAGTGAC 37509 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || ||||| |||||| || || || |||||||| || ||| ||| Sbjct 37510 ACAATAGAGAATGTAAAAGCAAAGATACAGGACAAGGAAGGAATCCCTCCCGACCAACAA 37569 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| || ||||| || ||||||||||||| || | | || |||||| || Sbjct 37570 AGATTAATCTTTGCAGGAAAACAACTGGAAGATGGAAGAACCCTTTCTGACTACAACATC 37629 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||| ||| || |||| ||||| ||||||| Sbjct 37630 CAGAAGGAGAGCACCATTCATCTTGTACTGAGACT 37664 >seq103 Length=70461 Score = 104 bits (114), Expect = 6e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || || ||||| || ||||| || || | ||||| ||| |||| Sbjct 50131 CAGATATTCGTAAAGACACTCACTGGTAAAACCATTACACTTGAAGTAGAACCAAGTGAC 50190 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || ||||| |||||| ||||| ||||||||||| || ||| ||| Sbjct 50191 ACAATAGAGAATGTAAAAGCAAAGATACAAGACAAAGAAGGAATACCACCCGACCAACAA 50250 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| || ||||| ||| |||| |||||||| || | | || |||||| | Sbjct 50251 AGATTAATCTTTGCAGGAAAACAGCTGGAGGATGGAAGAACACTTTCTGACTACAACATA 50310 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || ||||| ||| |||| ||||| || ||||| Sbjct 50311 CAAAAAGAAAGTACAATTCATCTTGTCTTAAGACT 50345 >seq109 Length=56162 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || || ||||| || || || || || ||||||| ||| |||| Sbjct 25214 CAGATATTCGTGAAGACACTCACTGGGAAGACAATTACACTGGAAGTAGAACCAAGTGAC 25155 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || |||||||| || || ||| || Sbjct 25154 TCAATAGAGAATGTCAAGGCAAAGATACAGGATAAAGAAGGGATACCACCCGACCAACAG 25095 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| || ||||| ||| | |||||||||||||| | | || || ||| | Sbjct 25094 AGACTAATCTTTGCAGGAAAACAGCTAGAAGATGGAAGGACACTTTCTGACTATAACATA 25035 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||| ||| ||| |||| ||||| || |||| Sbjct 25034 CAGAAGGAGAGTACGATTCATCTTGTACTGCGACT 25000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181817983573306