Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq103 102 7e-17 seq106 91.5 1e-13 >seq103 Length=70461 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || ||||| ||| | || || ||| | || || | ||||| ||| | | Sbjct 50127 CATGCAGATATTCGTAAAGACACTCACTGGTAAAACCATTACACTTGAAGTAGAACCAAG 50186 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || ||| | |||||| ||| || || ||||| || ||||| ||||| || Sbjct 50187 TGACACAATAGAGAATGTAAAAGCAAAGATACAAGACAAAGAAGGAATACCACCCGACCA 50246 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | || | | || ||||| || || |||| |||| | || ||||| Sbjct 50247 ACAAAGATTAATCTTTGCAGGAAAACAGCTGGAGGATGGAAGAACACTTTCTGACTACAA 50306 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 || ||||||||| || |||||| | || |||||| ||||||||||| Sbjct 50307 CATACAAAAAGAAAGTACAATTCATCTTGTCTTAAGACTGAGAGGAGGA 50355 >seq106 Length=63987 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | |||||||||||| | || || || | || || | ||||| ||| | | Sbjct 37447 ATGCAGATATTTGTAAAAACACTCACTGGTAAGACAATTACCCTGGAAGTAGAACCAAGT 37506 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | |||||| ||| || || || || || || || ||||| || Sbjct 37507 GACACAATAGAGAATGTAAAAGCAAAGATACAGGACAAGGAAGGAATCCCTCCCGACCAA 37566 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | | || |||||||| ||||||| |||| | || ||||| Sbjct 37567 CAAAGATTAATCTTTGCAGGAAAACAACTGGAAGATGGAAGAACCCTTTCTGACTACAAC 37626 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 || || || || |||||||||| | || | ||| ||||||||||| Sbjct 37627 ATCCAGAAGGAGAGCACCATTCATCTTGTACTGAGACTGAGAGGAGGA 37674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445093365155520