Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq103 109 6e-19 seq106 89.7 5e-13 >seq103 Length=70461 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||||||||| |||| || || || || | || ||| ||||| ||||||||||| Sbjct 50355 TCCTCCTCTCAGTCTTAAGACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGA 50296 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || || || || |||||||| |||||||| || || | || || ||||| || Sbjct 50295 AAGTGTTCTTCCATCCTCCAGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGG 50236 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||| |||||||| ||||| || ||| ||| || || | |||||| | ||| || Sbjct 50235 TATTCCTTCTTTGTCTTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTAC 50176 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||||||||| || | || || ||||| || ||||| Sbjct 50175 TTCAAGTGTAATGGTTTTACCAGTGAGTGTCTTTACGAATATCTGCAT 50128 >seq106 Length=63987 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||||||||| |||| || || || || | ||| ||||| || ||||||||||| Sbjct 37674 TCCTCCTCTCAGTCTCAGTACAAGATGAATGGTGCTCTCCTTCTGGATGTTGTAGTCAGA 37615 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| || || || ||||| |||||||| || || | || || ||||| || Sbjct 37614 AAGGGTTCTTCCATCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGG 37555 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || || ||| ||| || || | |||||| | ||| || Sbjct 37554 GATTCCTTCCTTGTCCTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTAC 37495 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || ||||| || ||||| || | ||||| || || || |||||| Sbjct 37494 TTCCAGGGTAATTGTCTTACCAGTGAGTGTTTTTACAAATATCTGCATT 37446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397224948720