Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq35 297 3e-75 seq105 279 7e-70 >seq35 Length=104599 Score = 297 bits (328), Expect = 3e-75 Identities = 937/1445 (65%), Gaps = 18/1445 (1%) Strand=Plus/Minus Query 68398 GGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGC 68457 ||||| || || | ||| || | || ||||| || || ||||||||||||| ||| Sbjct 79381 GGTTTGGTTCGCAAATAATAAGTTCCTGTTTTAAGTCCCTTTTTCCATCCGTAGAAGTGC 79322 Query 68458 ATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGA 68517 || |||||||||| || | | |||| | || ||||| |||||||| |||||||| Sbjct 79321 ATGCTTGTTAGTTGGGCAAAGGTTGGTGTAGAAATGTGAATGTTCATCGACTGACTTTGG 79262 Query 68518 TCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAA 68577 || | | || ||||| ||||| ||| | || | | || || ||||||||| Sbjct 79261 TCAACATATGCACCTCTGTCTGCTGCCTGATCAATTACAGCTTTCTGCTTTATTTCCCAA 79202 Query 68578 ATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCG---TATTTTGAATGGATCCA 68634 | ||| || | | ||||||||||| ||| || | ||| | | ||||| || ||||| Sbjct 79201 ACAGTTTTGTACAGCTGTTTGATATTATCAGGTATGCTGGGGATGTTTTGGATTGATCCT 79142 Query 68635 CCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACT 68694 ||| ||||| || ||||| ||||| ||||| | || | || | | Sbjct 79141 TCATGCTCAATAATAATGTTCTTCATCTCTGGCCCCCACAGGCCTAAATCTGCTAGATTT 79082 Query 68695 CTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATA 68754 | | | || | ||| || ||||| ||||| || || | ||| | ||||| ||| Sbjct 79081 TTTACCAAGTGAGAATTCACAATTTGGAATTCTCCTGAGAGTGTTCTTCTGGTGTATATA 79022 Query 68755 TTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTT 68814 |||||||| | || | | |||||| ||| |||||||| | ||||| || ||| Sbjct 79021 TTACTGGTGAAACCCTCAAAGCACTCATTAAATCCAAGAATTTGGGAGGTTGAGGCGGTT 78962 Query 68815 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGA 68874 ||||| | ||||| || |||||||||| | |||||| | ||| || | ||| ||| Sbjct 78961 GGCATGAGAGCCACTAACAAACTATTTCGTACACCATGGGCAGCGATCTTCTTTTTAAGA 78902 Query 68875 TGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCG 68934 ||| ||||| | ||||| || ||| ||| | ||| || || || ||||| Sbjct 78901 CCAGCCCAGTCCCATTGGTCAGAAGGCTGGACACCCCACATATCATACTGCAGTATTCCC 78842 Query 68935 TTACTTGCATATGA--TCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCAC 68992 || || || | || || ||||| || || || || | || | || |||||| Sbjct 78841 TTGCT--CACAGGACTGCCTGCATATGACTCGTATGGGCCGTACTTCTGTGCCAGTTCAT 78784 Query 68993 AACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTG 69052 |||||| | ||||| | ||||| ||||| || || || || | ||| || Sbjct 78783 TTGATGCCTCAAGCGCACCAAAGTAAATGGTTTCAAATATTGCTTTGTTTAACTCTGCTG 78724 Query 69053 CTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCC 69112 |||| || || |||||||| | |||||| || ||||||| | ||||| || | Sbjct 78723 CTTCCTTGCTCTCAAATGGATACCCCATAAGAATGTATACATCTGCTAGCCCCTGTACAC 78664 Query 69113 CAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAAT 69172 | || || ||||| | || || |||| ||| | | ||||| | | || || | | Sbjct 78663 CCATTCCTATAGGGCGGTGCTTCATATTAGAATTCTTAGCTTGTTCTAATGGGTATTTGT 78604 Query 69173 TAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGA 69232 | | ||| || ||||| || || ||| | |||||| ||| | || |||||||| || Sbjct 78603 TTACATCAATGATTTTGTTCAGGTTTTTGGCTACTATTTTTGCGACCTCCTTTAGCTTAT 78544 Query 69233 GAAAATCAAATCGTCCATCTATAACAAACATATT--CAGTGCTACAGATGCTAGATTACA 69290 || | |||| || | | | | || || ||||| | ||||| || ||||| Sbjct 78543 TGAAGTTAAAT--TCATTGTTTTCAATGTATGTTGGAAGTGCAAGTGATGCCAGGTTACA 78486 Query 69291 AACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTT 69350 || || | ||||| | || || || | | ||||| | ||| | || || | || Sbjct 78485 CACCGCAATTTCATTTGGATCTGTGTACTCAACAATCTCAGCACACAAGTTGCTTCCCTT 78426 Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || ||||| ||||| || |||||| |||||||| ||| || || ||||| | Sbjct 78425 GATCACTCCAAGATTCTGCTGGTTGCTCTTTCTGTTACAGCTGTCTTTATAGAGAATGTA 78366 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 ||| ||| |||||||||| | || | ||| | ||||| | || || | Sbjct 78365 CGGTACACCTGTTTCAATCTCTGCCTCAAGAATTGCCTTCCACAGCTTTCTTGCTGGAAC 78306 Query 69471 TACGGTCTTGTAA---CGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATC 69527 || |||| | | | || |||||||| || ||| ||| ||| ||| |||||||| Sbjct 78305 CACCTTCTTCTCAATTCTCTCTTCTTTTTCGTACTGTACATACAGCTCTTCAAATTCATC 78246 Query 69528 TCCCCAAACATCATCCAATCC--AGGACATTCATTTGGACACATCAATGACCACACATCA 69585 ||| | || | || || | ||| ||| || || | | | ||| | | Sbjct 78245 TCCGTACTTCTCGTGCAGGCCTTTTGCCAT--ATTGGGGCAAAATAGCGCCCAATCCCCG 78188 Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTG 69645 || || | ||||| |||||||||| || || | ||| || ||| || | || ||| Sbjct 78187 TCTTCTTCAACTCTCTTCATAAATAAGTCAGGTACCCATAGTCCTAAGAACAAATTTCTT 78128 Query 69646 GTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAA 69705 | || ||||||| || || ||||| ||| | | ||| | ||| || | || || Sbjct 78127 GCCCTCATTTCTTCCTTACCCGTATTCTTTCTCAAATCTAAAAAGTCAAATATGTCTCTG 78068 Query 69706 TGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATG 69765 |||||||| || | ||| | | || ||| || | ||||| |||||||| || | Sbjct 78067 TGCCATGGCTCAATATACACAACAATTGATCCAGGCCTCTTATTACCTCCCTGGTCAACA 78008 Query 69766 TATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTT 69825 || | | ||| || | | ||||||||||| ||||| || ||||| || | |||| Sbjct 78007 TACTTTGATGTGGCATCAAACACTCTCAGCATAGGAATTATCCCATTTGAATGACCAAAG 77948 Query 69826 GTTCC 69830 ||||| Sbjct 77947 GTTCC 77943 >seq105 Length=68279 Score = 279 bits (308), Expect = 7e-70 Identities = 600/886 (68%), Gaps = 31/886 (3%) Strand=Plus/Minus Query 39332 TATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATG 39391 || ||||| || || |||| || ||||| | ||| | | || ||| || ||||| Sbjct 56085 TACTCACCTACACGCATCTCAAAGAAATTTGCTTTTCTTCGCAGTGAAATTAGCTCCATA 56026 Query 39392 AAATCAAACGGATTAGTTGCATTATA----ttttttt--ttAAATCCTAATTCTGAAATC 39445 ||||| || || || |||| || || |||| || || | | | |||| | Sbjct 56025 AAATCGAATGGGTTTGTTGTGTTGTAGACCTTTTCTTCATTTAGTGC-AATT-----AGT 55972 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 || | |||||| ||||| || ||||| ||| || | || || ||||| | Sbjct 55971 AACCGATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGATGCCTATTAAA 55912 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGT---TATT 39562 ||| || || || || |||| |||||||||||| || || || |||||| |||| Sbjct 55911 GAAACAGGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTCTAAAACTATT 55852 Query 39563 ATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 || || || | || | |||| | | ||| | | | |||| | ||||| Sbjct 55851 TTCT-TGATATT--CTTA-CACTTGTTT-ATGAGGTGAGAATGTAAA----AGACAGGCA 55801 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 |||||||| || || || |||||||| || || | |||||||| || || || || ||| Sbjct 55800 AAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGC 55741 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742 || || || | ||| || ||||| || || | ||||| |||||||| ||||| || || Sbjct 55740 ATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATATTCCC 55681 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCAC 39799 ||||| |||||| ||||| || || ||| | | || | || || | | |||||| Sbjct 55680 TCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGATATCCAC 55621 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 | | ||||| || || ||||| |||| ||| || | || || || | || | Sbjct 55620 CTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTGGAATAAG 55561 Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 | | ||||| || |||| || | || || ||||||| | ||||||||| |||| Sbjct 55560 AAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACATCTCTGCG 55501 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979 || |||||||| ||| || || |||||||| ||||||||||| || | ||||| || Sbjct 55500 TGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGAACT 55441 Query 39980 TCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAAT 40039 |||||| ||| ||||| | || |||||||| || |||||||| || ||||| ||| Sbjct 55440 TCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGAAT 55381 Query 40040 GCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCA--TTGA 40097 || | ||||| ||||| | | | |||| | | | || | ||||||| ||| Sbjct 55380 GCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTCAGCTTG- 55322 Query 40098 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACA 40157 || ||||| | || |||||||| || ||||| || ||| |||| | ||| |||| Sbjct 55321 -GTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCTTTATACA 55263 Query 40158 TGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATT 40203 | ||| |||||| ||| | |||||| ||||||||||||||||| Sbjct 55262 TTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTATT 55217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907202937040