Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq105 242 3e-59 seq103 161 8e-35 seq165 82.4 6e-11 >seq105 Length=68279 Score = 242 bits (268), Expect = 3e-59 Identities = 591/885 (67%), Gaps = 28/885 (3%) Strand=Plus/Plus Query 43696 TAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACA 43755 ||| ||||| | || ||||| | ||||||| || ||| |||||| ||| | ||| Sbjct 55219 TAGATTTGTTATTTTCCCAATAGAGCATCATGATATTTGGGCAATGTATAAAGATGCAGT 55278 Query 43756 GGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG--ATT 43813 ||| ||| ||||| |||||||||||||| ||| | || ||| ||| | ||| | Sbjct 55279 GGCAGTATTCTGGACTGCAGAAGAAGTTGACTTGTCAAATGACCAAGCTGACTGGGAAAA 55338 Query 43814 GCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGC 43873 || |||| || | || | ||| ||||| || | || | || || |||||||| Sbjct 55339 GC--TAAATGCAAATGAGAGACACTTTATCTCCTATGTACTTGCATTCTTTGCTGCCTCA 55396 Query 43874 GACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAA 43933 || || || || |||||||| || ||| ||||||| |||||||||| || || Sbjct 55397 GATGGAATTGTAAATGAAAACTTAGTTGAAAGGTTTGCTTCAGAAGTTCAAATAAGCGAG 55456 Query 43934 GCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993 ||| ||||||| || || || |||||| |||||||| || || | || ||||| ||| Sbjct 55457 GCAAGATGTTTCTACGGATTCCAAATTATGATAGAAAACATACACGCAGAGATGTATAGT 55516 Query 43994 CTTCTGATAGATACGTACATCAAAGAT-GGGCACGAGAAGCATCGATTGTTTAATGCGAT 44052 | || ||||| || |||||||| ||| ||| || ||| | || || | || || Sbjct 55517 TTACTAATAGACACCTACATCAAGGATACTGCA-GAAAAGAACTTCTTATTCCAGGCAAT 55575 Query 44053 AGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCA-- 44110 || | | |||| || ||| | || |||||||||||||||| |||||| ||| Sbjct 55576 GGAGAATATTCCTGTAATAAAAAAGAAGGCAGACTGGGCCCTTAGGTGGATA---TCAGA 55632 Query 44111 -AATGATTCT---TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTT 44166 || || ||| |||| ||| | || || || |||||| ||| || || || ||||| Sbjct 55633 CAAGGAGTCTAGCTTTGCAGACAGGCTAGTTGCTTTTGCATGTGTAGAGGGAATATTCTT 55692 Query 44167 TTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGAC 44226 || ||||| ||||| | || || ||| | ||||| |||| | ||||| || | || Sbjct 55693 CTCTGGATCATTTGCATCAATTTTCTGGCTTAAGAAGAGAGGCCTTATGCCAGGTCTTAC 55752 Query 44227 GTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 || || || ||| | || || | |||||||| | || || || ||||| || | || Sbjct 55753 TTTCTCTAACGAGCTGATCAGCAGAGATGAAGGACTTCACTGTGACTTTGCCTGTCTTTT 55812 Query 44287 ACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGA 44346 || | | || | || ||| ||||||| || | | || ||| |||| Sbjct 55813 ACATTCTCACCTCATAAAC---AAG------TGTAAGAATATCAAGAAAATAGTTTTAGA 55863 Query 44347 GGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAAT 44406 |||||| |||| ||| |||| ||| | || ||| | ||||| ||||||||| || Sbjct 55864 GGCAGTTGAGATTGAAAAAGAGTTTTTAACTGATGCACTTCCTGTTTCTTTAATAGGCAT 55923 Query 44407 GAA-TGA-ACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA 44464 || | | ||| | ||| ||| || ||||| | | |||||||| ||||| | | | Sbjct 55924 CAACTCAGACTCT--ATGTGCCAGTACATTGAGTTTGTGGCAGATCGGTTACTAATTGCA 55981 Query 44465 CTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCG 44524 || | || || ||| | | |||||| || ||||||||||| ||||| Sbjct 55982 CTAAATGAAGAAAAGGTCTACAACACAACAAACCCATTCGATTTTATGGAGCTAATTTCA 56041 Query 44525 TTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATAT 44569 || | | ||| |||| || ||||| | || || || || ||| Sbjct 56042 CTGCGAAGAAAAGCAAATTTCTTTGAGATGCGTGTAGGTGAGTAT 56086 >seq103 Length=70461 Score = 161 bits (178), Expect = 8e-35 Identities = 270/387 (70%), Gaps = 5/387 (1%) Strand=Plus/Minus Query 19426 CCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAA 19485 || || |||||||| || || |||||||| | || || ||||| || || || || Sbjct 54817 CCACCTAAAATTGTGAACGGGCCTGAAATACTGAACAAGTATGTTGGGCAGAGTGAGGAG 54758 Query 19486 AATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAA-AG 19544 || || || ||||||| ||||| || |||| | || | | | |||| | || Sbjct 54757 AACATAAGAAAATTGTTTGAGGACGCAGAGAAAGACTATAAGCAAT-ACGGCGATGAGAG 54699 Query 19545 TTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG 19604 | | ||||||| |||||| | ||||| | || || || |||||| ||||| ||| Sbjct 54698 TGCACTGCACATAATAATATTTGATGAGATTGATGCGATTTGTAAGAGCAGAGGGTCTTC 54639 Query 19605 TGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAA 19664 | ||||| || |||| || || || ||||| || |||||| |||| ||||| | Sbjct 54638 T---AATGGCGTTGGTGACCAGGTGGTTAACCAACTGCTTTCAAAAATAGATGGTGTGGA 54582 Query 19665 CCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGC 19724 ||||||||||| | || ||||| |||||||| ||| |||| ||||| || || Sbjct 54581 GTCGTTGAATAATATTCTTGTGATTGGAATGACTAACAGAGTGGATTTAATTGATGATGC 54522 Query 19725 CTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGG 19784 |||||| ||||||||||||| || ||| | || ||||| | | || |||||| || Sbjct 54521 ATTATTAAGACCCGGTCGGTTTGAGATACACATTGAAATATCCCTGCCAGATGAAGCAGG 54462 Query 19785 ACGTGTGGAAATTTTAAACATACATAC 19811 | | ||||||| ||||| || ||||| Sbjct 54461 AAGACTGGAAATCTTAAAGATTCATAC 54435 >seq165 Length=118933 Score = 82.4 bits (90), Expect = 6e-11 Identities = 277/428 (65%), Gaps = 20/428 (5%) Strand=Plus/Plus Query 40868 TGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTAT 40927 |||||||||||| |||| || | |||| | |||||||||| ||| | || | || Sbjct 85730 TGATCTTGGTCCAATTTACGGGTACCAGTGGAGACATTTTGGTGCAGAGTACAAAACCTG 85789 Query 40928 GTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAA 40987 | ||| ||| | |||||||| || || || ||| | || || || | || Sbjct 85790 CGAGGATGACTATTCTAATAAAGGCATTGACCAGTTAAACCAAGTGATTGAGGAATTAAA 85849 Query 40988 ATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTT 41047 | | |||| | || || ||||| || | || || ||||| ||| || || | Sbjct 85850 AACAAATCCAAACAGTCGCCGTATGATTGTATGTGCATGGAATCCATGCGATCTAGACCA 85909 Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTT--------TGCAATGGT 41099 |||||| | || || || ||| | |||| ||||| |||| || || | | Sbjct 85910 GATGGCTCTTCCTCCATGCCATGTCTTATTCCAGTT---CGTTGTAGTAAATGGAAAGCT 85966 Query 41100 GAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAAC 41159 ||||| |||| || || |||||||| ||||| | || ||||| || || ||||| Sbjct 85967 AAACTG-CATG----TTATACCAAAGATCTGGTGATGTAGGGCTAGGAGTGCCTTTTAAT 86021 Query 41160 ATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGT 41219 || || |||||||| || ||| | ||| | | | | |||||| | | | ||| Sbjct 86022 ATTGCAAGTTATGCCCTACTCCTTAAAATGGTCTCGTATCTAACCAATATTCCAGCAGGT 86081 Query 41220 GAATTTGTTCACACGT--TAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAA 41277 || |||| | ||||| | |||| ||||| ||| |||||||||| | | ||| Sbjct 86082 GAGTTTG--CCCACGTACTTTCTGATGCTCATATATACTCCAATCACATAGCTCAGCTAA 86139 Query 41278 CAGAACAA 41285 |||| ||| Sbjct 86140 CAGAGCAA 86147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455099016930