Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq105 127 3e-24 seq35 109 7e-19 >seq105 Length=68279 Score = 127 bits (140), Expect = 3e-24 Identities = 455/694 (66%), Gaps = 22/694 (3%) Strand=Plus/Minus Query 122488 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GTT 122546 ||||| | |||| |||||||||||| | |||| || ||||| || || || | | Sbjct 55968 CGATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGATGCCTATTAAAGAA 55909 Query 122547 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606 ||| || ||||| || | ||| |||| ||||||||||| |||||| || || Sbjct 55908 ACA-GGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTCTAAAACTATTTT 55850 Query 122607 GTGGATAGTTTCGGTAGTGGGTCTATTACGCAA-AGTCTTGAAGAGCTCCACGGCAAACT 122665 | |||| | | || | ||| | | | | | | |||| || |||||| | Sbjct 55849 CTTGATATTCTTACACTTG--TTTATGAGGTGAGAATGTAAAAGA----CA-GGCAAAGT 55797 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||| || || ||||||| | || || || || ||||| ||||||||||| | Sbjct 55796 CACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGCATAA 55737 Query 122726 GACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 | || | |||||| | ||| |||| | ||| ||||| || |||||||| || ||||| Sbjct 55736 GGCCTCTCTTCTTAAGCCAGAAAATTGATGCA-AATGATCCAGAGAAGAATATTCCCTCT 55678 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT--TTGCATCA-AACCAT 122841 ||||| ||||| |||| || | || || | ||| ||||| ||| | | | ||| Sbjct 55677 ACACATGCAAAAGCAACTAGCCTGTCTGCAA---AGCTAGACTCCTTGTCTGATATCCAC 55621 Query 122842 TTCATTGCCCATTTCGCCTTC-TTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 122900 | | ||||| | |||||| || | | |||| || | | | | || || | ||||| Sbjct 55620 CTAAGGGCCCAGTCTGCCTTCTTTTTTATTACA-GGAATATTCTCCATTGCCTGGAATAA 55562 Query 122901 CTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCC 122960 |||||||| | |||||| ||||| |||| || | | ||| | || | Sbjct 55561 GAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACATCTCTGC 55502 Query 122961 ATGAACCATTTC-ATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAA 123019 || | |||| || || ||| || ||||||| | | || |||||||| |||| Sbjct 55501 GTGTATGTTTTCTATCAT-AATTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGAA 55443 Query 123020 CCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGA 123079 | || ||||| | | | | || ||| ||||||||||| || ||||||||| Sbjct 55442 CTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGA 55383 Query 123080 ATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAA 123139 |||| || | || || || | | |||||| |||| || | | |||||| | Sbjct 55382 ATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTCAGCTT 55323 Query 123140 GATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 | || || ||||| ||||||||||| |||||||| Sbjct 55322 GGTCATTTGACAAGTCAACTTCTTCTGCAGTCCA 55289 >seq35 Length=104599 Score = 109 bits (120), Expect = 7e-19 Identities = 1071/1716 (62%), Gaps = 48/1716 (3%) Strand=Plus/Minus Query 110362 TCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGA 110421 ||| | ||| || | || || || ||||| | ||||||| |||| | ||||| | Sbjct 79373 TCGCAAATAATAAGTTCCTGTTTTAAGTCCCTTTTTCCATCCGTAGAAGTGCATGCTTGT 79314 Query 110422 GAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAA 110481 || | || | ||||| | ||| | |||||| ||||||||||||| | Sbjct 79313 TAGTTGGGCAAAGGTTGGTGTAGAAATGTGAATGTTCATCGACTGACTTTGGTCAACATA 79254 Query 110482 -GCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGC 110540 || || | || ||| ||| |||||| ||| | ||| ||| ||||||||||| || Sbjct 79253 TGCACCTCTGTC-TGCTGCCTGATCAATTACAGCTTTCTGCTTTATTTCCCAAACAGTTT 79195 Query 110541 GATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCT 110600 || || | ||||||| ||| || || | ||| || ||||| || || | || Sbjct 79194 TGTACAGCTGTTTGATATTATCAGGTATGCTGGGGATGTTTTGGATTGATCCTTCATGCT 79135 Query 110601 TCACCATGAGATCCTTCATATCCTTGGACC--AGAGACC--AATCTTCTTGAGGTCATTG 110656 | || | | |||||| || ||| || | || || ||||| || || | || Sbjct 79134 CAATAATAATGTTCTTCATCTC--TGGCCCCCACAGGCCTAAATCTGCTAGATTT--TTT 79079 Query 110657 ACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTT 110716 || | ||| || ||||| || || |||| ||| |||||||| ||| || || Sbjct 79078 ACCAAGTGAGAATTCACAATTTGGAATTCTCCTGAGAGTGTTCTTCTGGTGTATATATTA 79019 Query 110717 GTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGAGGCTGTTGG 110775 | ||| | |||||||| |||||| | |||||| |||| | ||| ||||| ||||| Sbjct 79018 CTGGTGAAACCCTCAAAGCACTCATTAA-ATCCAAGAATTTGGGAGGTTGAGGCGGTTGG 78960 Query 110776 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC 110835 ||| | |||| || | ||| || || | ||| | | ||| | || ||| | Sbjct 78959 CATGAGAGCCACTAACAAACTATTTCGTACACCATGGGCAGCGATCTTCTTTTTAAGACC 78900 Query 110836 ATCCCAGTCGTAGTTG-----AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACC 110890 | ||||||| | | | || ||| |||| |||||| ||| |||| || | Sbjct 78899 AGCCCAGTCCCATTGGTCAGAAGGCTGGA--CACC---CCACATATCATACTGCAGTATT 78845 Query 110891 CCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG--CCAATT 110948 || | | | | ||| || || | | || || | || | |||| | ||| || Sbjct 78844 CCCTTGCTCACAGGACTGCCTGCATATGACTCGTATGGGCCGTA--CTTCTGTGCCAGTT 78787 Query 110949 CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCT 111008 || ||||| || | | || ||||||||||| || || | ||| Sbjct 78786 CATTTGATGCCTCAAGCGCACCAAAGTAAATGGTTTCAAATATTGCTTTGTTTAACTCTG 78727 Query 111009 TGGCTTCATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGA 111067 ||||| | ||||||| || | || || ||| ||||||| || || || || Sbjct 78726 CTGCTTCCTTGCTCTCAAATGGATACCC-CATAAGAATGTATACATCTGCTAGCCCCTGT 78668 Query 111068 ACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTT--TCGCGCAGTCTCAACGGGAT 111125 ||||||| || ||||| | ||| ||||||||| || | || ||| || ||| | Sbjct 78667 ACACCCATTCCTATAGGGCGGTGCTTCATATTAGAATTCTTAGCTTGTTCT-AATGGG-T 78610 Query 111126 AAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAA 111185 | ||| ||||||| | ||| || ||||||| || || |||| || || | | Sbjct 78609 ATTTGTTTACATCAATGATTTTGTTCAGGTTTTTGGCTACTATTTTTGCGACCTCCTTTA 78550 Query 111186 GTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATG 111245 | || | | | ||| | | | | | |||| || || ||||||| || | ||||| Sbjct 78549 GCTTATTGAAGTTAAA--TTC-ATTGTTTTCAATG---TATGTTGGAAGTGCAAGTGATG 78496 Query 111246 CCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGT 111305 ||| || || || || | |||| |||||||||||| | ||| || | ||| |||| Sbjct 78495 CCAGGTTACACACCGCAATTTCATTTGGATCTGTGTACTCAACAATCTCAGCACACAAGT 78436 Query 111306 TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGT 111365 || | ||| ||| || | ||||| ||||| ||||| |||| || || || | Sbjct 78435 TGCTTCCCTTGATCACTCCAAGATTCTGCTGGTTGCTCTTTCTGTTACAGCTGTCTTTAT 78376 Query 111366 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGG 111425 |||| ||||| || || || || ||| || | ||||| |||||||| | | Sbjct 78375 AGAGAATGTACGGTACACCTGTTTCAATCTCTGCCTCAAGAATTGCCTTCCACAGCTTTC 78316 Query 111426 CGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGC---CTCGTACTTTGTGTAGAGGGCTT 111482 ||||| || | || | || ||| | ||||||| | || || ||| Sbjct 78315 TTGCTGGAACCACCTTCTTCTCAATTCTCTCTTCTTTTTCGTACTGTACATACAGCTCTT 78256 Query 111483 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACC 111542 |||| || || || | ||| || ||| |||| | | || || || || | || Sbjct 78255 CAAATTCATCTCCGTACTTCTCGTGCAGGCCTTTTGCCATATTGGGGCAAAATAGCGCCC 78196 Query 111543 ATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 111602 | | || |||| ||||| | |||||| || | ||| || | ||| || | | || | Sbjct 78195 AATCCCCGTCTTCTTCAACTCTCTTCATAAATAAGTCAGGTACCCATAGTCCTAAGAACA 78136 Query 111603 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGA 111662 || ||| || ||||| | ||| || || || || | || || | | Sbjct 78135 AATTTCTTGCCCTCATTTCTTCCTTACCCGTATTCTTTCTCAAATCTAAAAAGTCAAATA 78076 Query 111663 TATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC---CTTTCGACGCCCAGCTT 111719 | || |||||||||||||| ||| || | || ||||| | | | || | | Sbjct 78075 TGTCTCTGTGCCATGGCTCAATATACACAACAATTGATCCAGGCCTCTTATTACCTCCCT 78016 Query 111720 GATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATT 111779 | | ||||| | |||||| | ||| || | ||||| ||||| || |||| ||| | Sbjct 78015 GGTCAACATACTTTGATGTGGCATCAAACACTCTCAGCATAGGAATTATCCCATTTGAAT 77956 Query 111780 GACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAA 111839 ||||| || ||| ||| || | || |||| | | ||||||| || |||| Sbjct 77955 GACCAAAGGTTCCCTTAATGTATGAGCCAGTGCCTCTGATGTTGTGGATGTTCACACCAA 77896 Query 111840 TACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGA 111899 | || || || |||||| || ||||||| | |||| || || || || | | Sbjct 77895 TCCCTCCTGCATGCTTTGATATCATTGCACACTGCTTAAGCGTATTGTATATTCCATCAA 77836 Query 111900 TTGAGTC-CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCA 111958 |||| || ||| | | | |||| || || ||||||| ||| ||| || ||| Sbjct 77835 TTGAATCACTCTGCATAGCCAATAA-AAAACAGCTGGACAGCTGTGGTGAAATGGTTCCA 77777 Query 111959 GCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG-GGACATCTTGTCGTATGT 112017 ||||| || || || || || || || || | | | | ||||| || ||||| Sbjct 77776 CTGTTGAAAAGAGTAGGCGTAGCATGTAT-AAAGTGCTTAGTAGACATAAGCTCATATGT 77718 Query 112018 CTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 112053 | | | |||| |||||||| ||| | ||||| || Sbjct 77717 TTGTATGGCAGATTCAATGTCATCCTCATGGATTCC 77682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030539825600