Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq105 93.3 5e-14 >seq105 Length=68279 Score = 93.3 bits (102), Expect = 5e-14 Identities = 198/290 (68%), Gaps = 8/290 (3%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || || || || | | ||| || || || ||||| ||||| Sbjct 55804 GGCAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACC 55745 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||| || || | |||||| | ||||||||| | |||||| ||||||||||| || Sbjct 55744 TGGCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATAT 55685 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT--TTGTATCA 130192 ||||| ||||| || || |||| || | || |||| ||| |||| |||| | | Sbjct 55684 TCCCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAA---AGCTAGACTCCTTGTCTGA 55628 Query 130193 -AACCACTTCATCGCCCACTGCGCCTT-TTTCTCGATACACGGGACGGTCTGGATCGCTT 130250 | |||| | | ||||| | ||||| ||| | |||| || | ||| || || | Sbjct 55627 TATCCACCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACA-GGAATATTCTCCATTGCCT 55569 Query 130251 CAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGT 130300 || | |||||||||| | ||| |||||||| | ||||| ||| Sbjct 55568 GGAATAAGAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGT 55519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433762138160