Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq35 134 2e-26 seq105 116 4e-21 >seq35 Length=104599 Score = 134 bits (148), Expect = 2e-26 Identities = 650/1023 (64%), Gaps = 18/1023 (2%) Strand=Plus/Plus Query 104252 GGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCC-CAAGG 104310 || || |||| ||| |||||||| |||| | | | ||||| || ||||| | | | Sbjct 77682 GGAATCCATGAGGATGACATTGAATCTGCCATACAAACATATGAGCTTATGTCTACTAAG 77741 Query 104311 TATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTC 104370 | || || || || || || || || ||||| ||| || ||| || |||| Sbjct 77742 CACTTT-ATACATGCTACGCCTACTCTTTTCAACAGTGGAACCATTTCACCACAGCTGTC 77800 Query 104371 CAGTTGCTTCCTTATCGCCAACAAGGAG-GACTCAATCAACGGTATCTATGGAACTCTTA 104429 ||| || || |||| | | | ||| || ||||| | || || || || |||| Sbjct 77801 CAGCTGTTTT-TTATTGGCTATGCAGAGTGATTCAATTGATGGAATATACAATACGCTTA 77859 Query 104430 CGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGA 104489 | ||||||| || |||||| || || || ||||| || ||||||| | | | Sbjct 77860 AGCAGTGTGCAATGATATCAAAGCATGCAGGAGGGATTGGTGTGAACATCCACAACATCA 77919 Query 104490 GAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGC 104549 ||| || | || ||| ||| || |||||| ||| |||| || ||||| |||| Sbjct 77920 GAGGCACTGGCTCATACATTAAGGGAACCTTTGGTCATTCAAATGGGATAATTCCTATGC 77979 Query 104550 TTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTCGAAAG---GGAT 104606 | | || ||| | |||||| | ||||| | || | || | | | |||| Sbjct 77980 TGAGAGTGTTTGATGCCACATCAAAGTATGTTGACCAGGGAGGTAATAAGAGGCCTGGAT 78039 Query 104607 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 104666 | || | || ||| |||||||||||||| || || | || || | || ||| | Sbjct 78040 CAATTGTTGTGTATATTGAGCCATGGCACAGAGACATATTTGACTTTTTAGATTTGAGAA 78099 Query 104667 TCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAG 104726 || ||| | || || | || | || | |||| | || ||| | || | Sbjct 78100 AGAATACGGGTAAGGAAGAAATGAGGGCAAGAAATTTGTTCTTAGGACTATGGGTACCTG 78159 Query 104727 ATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGG 104786 | | || |||||||||||||| || || ||||| | || ||||| || | | || Sbjct 78160 ACTTATTTATGAAGAGAGTTGAAGAAGACGGGGATTGGGCGCTATTTTGCCCCAATATGG 78219 Query 104787 CACCTGGTCTCTCCGATGCCGTG-GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG 104845 || || || ||| | || || || || ||||||| || || | ||||||| Sbjct 78220 CAAAAGGCCTGCACGA-GAAGTACGGAGATGAATTTGAAGAGCTGTATGTACAGTACGAA 78278 Query 104846 GAAGAAGGTCGG---GCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTC 104902 |||||| | | || | ||| ||||| | ||||||| || ||||| Sbjct 78279 AAAGAAGAGAGAATTGAGAAGAAGGTGGTTCCAGCAAGAAAGCTGTGGAAGGCAATTCTT 78338 Query 104903 AAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAG 104962 || | | | || || ||| ||| ||||| || || |||||| ||||||| |||| Sbjct 78339 GAGGCAGAGATTGAAACAGGTGTACCGTACATTCTCTATAAAGACAGCTGTAACAGAAAG 78398 Query 104963 AGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAA 105022 || || || ||||| | || ||||||||| | ||| | ||| | || || | || Sbjct 78399 AGCAACCAGCAGAATCTTGGAGTGATCAAGGGAAGCAACTTGTGTGCTGAGATTGTTGAG 78458 Query 105023 TTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTAT 105082 | ||||| | |||| | || ||||||||||| |||||| | || || || | || Sbjct 78459 TACACAGATCCAAATGAAATTGCGGTGTGTAACCTGGCATCACTTGCACTTCCAACATAC 78518 Query 105083 GTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTC 105142 | || | |||| || |||| | | | || || | || || | |||| || Sbjct 78519 ATTGA-----AAACAATGA-ATTTAACTTCAATAAGCTAAAGGAGGTCGCAAAAATAGTA 78572 Query 105143 ACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAA 105202 |||||||||| |||| | | |||||| ||| ||||| | || ||| || Sbjct 78573 GCCAAAAACCTGAACAAAATCATTGATGTAAACAAATACCCATTAGAACAAGCTAAGAAT 78632 Query 105203 TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT 105262 |||||||||| ||||| || || || | ||||| ||||| || || ||||||| |||| Sbjct 78633 TCTAATATGAAGCACCGCCCTATAGGAATGGGTGTACAGGGGCTAGCAGATGTATACATT 78692 Query 105263 CTT 105265 ||| Sbjct 78693 CTT 78695 >seq105 Length=68279 Score = 116 bits (128), Expect = 4e-21 Identities = 345/521 (66%), Gaps = 12/521 (2%) Strand=Plus/Plus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGAA 94500 |||||||| ||||| || || | ||||| || | || ||| | | ||||||| | Sbjct 55289 TGGACTGCAGAAGAAGTTGACTTGTCAAATGACCAAGCTGACTGGGAAAAGCTAAATGCA 55348 Query 94501 AATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTT 94560 ||||| | | || || || | || ||||||||||||| || ||||||||||| Sbjct 55349 AATGAGAGACACTTTATCTCCTATGTACTTGCATTCTTTGCTGCCTCAGATGGAATTGTA 55408 Query 94561 TTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCCTTC 94620 ||| || | | | | |||||| || || ||| || || |||| ||| Sbjct 55409 AATGAAAACTTAGTTGAAAGGTTTGCTTCAGAAGTTCAAATAAGCGAGGCAAGATGTTTC 55468 Query 94621 TATGCGTATCAGTGTCATAAT-GAAATGGTGCATGGGGAGACATACAGTAAACTCATAGA 94679 || | | || | || || |||| | || | |||| || ||| ||| ||||| Sbjct 55469 TACGGATTCCAAATT-ATGATAGAAAACATACACGCAGAGATGTATAGTTTACTAATAGA 55527 Query 94680 CAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCC 94739 || || || |||||| ||| || ||||| | || | || || | | |||| Sbjct 55528 CACCTACATCAAGGATACTGCAGAAAAGAACTTCTTATTCCAGGCAATGGAGAATATTCC 55587 Query 94740 GTGTATTCAAAA-GAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAA--AGTCGCGTT 94795 |||| | |||| ||| || || ||||| | | |||| | | | |||| |||| | Sbjct 55588 -TGTAATAAAAAAGAAGGCAGACTGGGCCCTTAGGTGGATATCAGACAAGGAGTCTAG-- 55644 Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||||| || | || | || ||||| ||||| ||||| || ||||||||||| || | Sbjct 55645 -CTTTGCAGACAGGCTAGTTGCTTTTGCATGTGTAGAGGGAATATTCTTCTCTGGATCAT 55703 Query 94856 TCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 | ||| | |||| ||||| |||||| |||| || ||||||||||| ||||| ||| Sbjct 55704 T-TGCATCAATTTTCTGGCTTAAGAAGAGAGGCCTTATGCCAGGTCTTACTTTCTCTAAC 55762 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||| | || || ||||| ||| || ||||| Sbjct 55763 GAGCTGATCAGCAGAGATGAAGGACTTCACTGTGACTTTGC 55803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259443918640