Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq106 179 1e-39 seq103 168 2e-36 seq109 167 7e-36 seq1 152 2e-31 seq35 102 2e-16 >seq106 Length=63987 Score = 179 bits (198), Expect = 1e-39 Identities = 170/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 140522 TCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCC 140581 ||| || |||||||||| || ||| || || || || || ||||| | |||| || Sbjct 37662 TCTCAGTACAAGATGAATGGTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTTCC 37603 Query 140582 ATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTT 140641 |||||| ||||||||||| |||||||||| | ||| || || ||||| |||||||| || Sbjct 37602 ATCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGGGATTCCTTCCTT 37543 Query 140642 ATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAAC 140701 ||||| || || ||||||||||| || || | ||| |||||| ||||| || |||| Sbjct 37542 GTCCTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTACTTCCAGGGTAAT 37483 Query 140702 TGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||||| || || |||||||||||||| ||||||||| Sbjct 37482 TGTCTTACCAGTGAGTGTTTTTACAAATATCTGCATT 37446 >seq103 Length=70461 Score = 168 bits (186), Expect = 2e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 140522 TCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCC 140581 ||||| |||||||||| ||| |||||||| || || || ||||| | ||||| || Sbjct 50343 TCTTAAGACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGAAAGTGTTCTTCC 50284 Query 140582 ATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTT 140641 ||| || || |||||||| |||||||||| | ||| || || || || ||||||||||| Sbjct 50283 ATCCTCCAGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGGTATTCCTTCTTT 50224 Query 140642 ATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAAC 140701 || || || || ||||||||||| || || | ||| |||||| ||||||||||||| Sbjct 50223 GTCTTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTACTTCAAGTGTAAT 50164 Query 140702 TGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || ||||| ||||| || |||||||| Sbjct 50163 GGTTTTACCAGTGAGTGTCTTTACGAATATCTGCAT 50128 >seq109 Length=56162 Score = 167 bits (184), Expect = 7e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||||| ||| ||| || || || ||||| ||||| | ||| | |||||| Sbjct 25006 AGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAGTCAGAAAGTGTCCTTCCATCT 25065 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || |||||||| ||||||||||| | || || || || || || |||||||||||| Sbjct 25066 TCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGTCGGGTGGTATCCCTTCTTTATCC 25125 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || || ||| |||||| ||||| ||||||| |||| Sbjct 25126 TGTATCTTTGCCTTGACATTCTCTATTGAGTCACTTGGTTCTACTTCCAGTGTAATTGTC 25185 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || ||||| || || || |||||||| Sbjct 25186 TTCCCAGTGAGTGTCTTCACGAATATCTGCAT 25217 >seq1 Length=377182 Score = 152 bits (168), Expect = 2e-31 Identities = 333/496 (67%), Gaps = 2/496 (0%) Strand=Plus/Plus Query 67768 TTTATTGATAAAGAATTTATCCATTTCTCAACATAC-GATAATGAACGTTCTATTCCAAA 67826 |||||||||| |||||| |||||||||||| | | | |||||| | || ||||| || Sbjct 322571 TTTATTGATAGAGAATTAATCCATTTCTCA-CTTGCTGATAATATCAGGTCGATTCCTAA 322629 Query 67827 TTTAATTGATGGTTTTAAAATTAGTTTAAGAAAAATTATCTATTCGGCATTTAAGAAACG 67886 | |||||||||| | || | | | || ||||| || | ||||||| | Sbjct 322630 TGTAATTGATGGGATGAAGCCTGGACAGCGTAAGATTATTTACTGTTGTTTTAAGAGGCA 322689 Query 67887 TCTAACTAGTGAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGCTA 67946 || | |||||| ||||| ||||| | |||||||||||||| || || | || Sbjct 322690 GCTCAAGTCTGAAATAAAAGTAGCACAGCTGGCAGGTTATGTTTCAGAGCACTCGGCTTA 322749 Query 67947 TCATCACGGTGAAGCTAGTTTAAATTCATCAATTGTAGGTTTAGCTCAGAATTTTGTTGG 68006 |||||| || ||| |||||| ||| |||||||| | | || ||| | | |||||| Sbjct 322750 TCATCATGGAGAACAGAGTTTATGCTCAACAATTGTAAATCTTGCCCAGGACTATGTTGG 322809 Query 68007 ATCAAATAATATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACTTGGAGG 68066 ||| ||||||||| | | || | || | || || ||||| ||| | |||| || || Sbjct 322810 ATCGAATAATATTCCTCTGTTACAGCCCATTGGACAGTTTGGGACTCGTTTACAGGGTGG 322869 Query 68067 AAAAGATGCTGCATCTGAAAGATATATATTTACACATCTAAATACTTTAACTAGACTTAT 68126 ||| ||||| || | || ||||||||||| ||| | | |||| ||| || Sbjct 322870 AAAGGATGCAGCCAGTCCCAGGTATATATTTACTGCACTACAACCAATAACCAGATACAT 322929 Query 68127 CTTTAGACAAGAAGATGATAATATTCTTGAATATTTAGAAGATGATGGTGATAAAGTTGA 68186 || | || |||| || || || | | || ||| | ||||| | | || || Sbjct 322930 ATTCCGGGAACAAGACGACCATCTTTTAAACTACTTAAAGGATGACAATCTAATGGTAGA 322989 Query 68187 GCCAATCTATTATGTTCCTATTATTCCTATGATTTTAGTAAATGGTTCAAAAGGGATTGG 68246 ||| | || |||| ||||| || ||| || |||| ||||| ||| |||| || || Sbjct 322990 ACCAGACATGTACATTCCAATTATACCGATGGTTCTAGTGAATGGATCAGAAGGTATCGG 323049 Query 68247 CACTGGATTTAGTACA 68262 || |||| |||||| Sbjct 323050 TACAGGATGGAGTACA 323065 >seq35 Length=104599 Score = 102 bits (112), Expect = 2e-16 Identities = 191/277 (69%), Gaps = 8/277 (3%) Strand=Plus/Minus Query 206448 CTGGTCAATATATCGAGCTGTTTTATTAAATACGCCTAGCATAGGAATAATACCATTAGA 206507 |||||||| ||| | ||| || ||| || | ||||||||||| || ||||| || Sbjct 78017 CTGGTCAACATACTTTGATGTGGCATCAAACACTCTCAGCATAGGAATTATCCCATTTGA 77958 Query 206508 AGTTCCATTTGTTCCTCTAA--TATGACTGCCAGTCCCTCTAATATTATGTATATGTAAT 206565 | ||| ||||| ||| ||||| |||||| ||||| || || || || | | Sbjct 77957 ATGACCAAAGGTTCCCTTAATGTATGA--GCCAGTGCCTCTGATGTTGTGGATGTTCACA 77900 Query 206566 CCAATTCCTCCTGCCCATTTTGAAATATTAGCACATTCTTTTAATGTATTATAAATTCCA 206625 ||||| |||||||| ||||| || | ||||| | || | ||||| || |||||| Sbjct 77899 CCAATCCCTCCTGCATGCTTTGATATCATTGCACACTGCTTAAGCGTATTGTATATTCCA 77840 Query 206626 TCAACACTATCACTTTCCATAGCAATTAAAAAACA--AGAACTTAATTGTGGTCGTGGCG 206683 |||| |||||| | |||||| | ||||||||| | || | |||||| | Sbjct 77839 TCAATTGAATCACTCTGCATAGCCAATAAAAAACAGCTGGAC--AGCTGTGGTGAAATGG 77782 Query 206684 TTCCAGCATTAAATAAAGTAGGAGTAGCATGTGTAAA 206720 ||||| || || | |||||| ||||||||| |||| Sbjct 77781 TTCCACTGTTGAAAAGAGTAGGCGTAGCATGTATAAA 77745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515250788959358