Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq106 113 5e-20 seq105 100 3e-16 >seq106 Length=63987 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || || ||||| ||||| || || || || || | Sbjct 37446 AATGCAGATATTTGTAAAAACACTCACTGGTAAGACAATTACCCTGGAAGTAGAACCAAG 37505 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| | || || || || ||||||||||| ||||| ||||| ||||| Sbjct 37506 TGACACAATAGAGAATGTAAAAGCAAAGATACAGGACAAGGAAGGAATCCCTCCCGACCA 37565 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | |||| ||||| || || ||||| || |||| | ||||| | ||||| || Sbjct 37566 ACAAAGATTAATCTTTGCAGGAAAACAACTGGAAGATGGAAGAACCCTTTCTGACTACAA 37625 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| ||| ||||||| || Sbjct 37626 CATCCAGAAGGAGAGCACCATTCATCTTGT 37655 >seq105 Length=68279 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| ||||| || ||||| ||||| ||||| ||||| || ||||||||||| Sbjct 55664 GCTTTTGCATGTGTAGAGGGAATATTCTTCTCTGGATCATTTGCATCAATTTTCTGGCTT 55723 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || ||| | ||||| ||||||||||| | || || |||||||||||| Sbjct 55724 AAGAAGAGAGGCCTTATGCCAGGTCTTACTTTCTCTAACGAGCTGATC 55771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309074028320