Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq106 127 1e-24 >seq106 Length=63987 Score = 127 bits (140), Expect = 1e-24 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | || || | ||| | ||||||||||| || ||||| || || ||| Sbjct 37673 CCTCCTCTCAGTCTCAGTACAAGATGAATGGTGCTCTCCTTCTGGATGTTGTAGTCAGAA 37614 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| |||||||| || ||||| ||||| | |||||||| || || Sbjct 37613 AGGGTTCTTCCATCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGGG 37554 Query 34600 ACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGATAAAATTGTGT--CTTCGCTCTCC 34656 | ||| ||||||| |||| |||||| ||||| ||||||| ||| | ||| Sbjct 37553 ATTCCTTCCTTGTCCTGT-ATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCT-- 37497 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||| || || ||||| || | ||||| ||||| |||||||| Sbjct 37496 ACTTCCAGGGTAATTGTCTTACCAGTGAGTGTTTTTACAAATATCTGCAT 37447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728886547338