Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq103 129 5e-25 seq106 125 6e-24 seq109 113 4e-20 >seq103 Length=70461 Score = 129 bits (142), Expect = 5e-25 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 26972 TTTTAATTT--ATAC----GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTAT 27025 ||||||||| |||| |||||||||||||| ||||| || || || || || | || Sbjct 50106 TTTTAATTTTTATACCCCAGCCATGCAGATATTCGTAAAGACACTCACTGGTAAAACCAT 50165 Query 27026 TACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAA 27085 ||| |||||||| ||||| ||| | || |||| || ||| ||| || |||||||| Sbjct 50166 TACACTTGAAGTAGAACCAAGTGACACAATAGAGAATGTAAAAGCAAAGATACAAGACAA 50225 Query 27086 AGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAG 27145 |||||| ||||||||||| ||||| | ||||| | || || ||||| |||| || | Sbjct 50226 AGAAGGAATACCACCCGACCAACAAAGATTAATCTTTGCAGGAAAACAGCTGGAGGATGG 50285 Query 27146 TTCGACCGTTTCCGATTACAACATTCAAAAGGA 27178 || |||| || |||||||| ||||| || Sbjct 50286 AAGAACACTTTCTGACTACAACATACAAAAAGA 50318 >seq106 Length=63987 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||||||||| || || || ||| | ||||| || ||||| ||||| Sbjct 37447 ATGCAGATATTTGTAAAAACACTCACTGGTAAGACAATTACCCTGGAAGTAGAACCAAGT 37506 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||| || || ||||| ||||| || || ||||| ||| Sbjct 37507 GACACAATAGAGAATGTAAAAGCAAAGATACAGGACAAGGAAGGAATCCCTCCCGACCAA 37566 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | || || |||||| ||||||| | ||| |||| || |||||| Sbjct 37567 CAAAGATTAATCTTTGCAGGAAAACAACTGGAAGATGGAAGAACCCTTTCTGACTACAAC 37626 Query 27168 ATTCAAAAGGAG 27179 || || |||||| Sbjct 37627 ATCCAGAAGGAG 37638 >seq109 Length=56162 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || || || || ||| | ||||| || ||||| ||||| Sbjct 25217 ATGCAGATATTCGTGAAGACACTCACTGGGAAGACAATTACACTGGAAGTAGAACCAAGT 25158 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || |||| ||||| ||| || || || |||||||| ||||||||||| ||| Sbjct 25157 GACTCAATAGAGAATGTCAAGGCAAAGATACAGGATAAAGAAGGGATACCACCCGACCAA 25098 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | |||| | || || ||||| | ||||| | ||| |||| || || ||| Sbjct 25097 CAGAGACTAATCTTTGCAGGAAAACAGCTAGAAGATGGAAGGACACTTTCTGACTATAAC 25038 Query 27168 ATTCAAAAGGAG 27179 || || |||||| Sbjct 25037 ATACAGAAGGAG 25026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917388814720