Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq106 170 4e-37 seq109 127 5e-24 >seq106 Length=63987 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || ||||| |||| ||| ||| || |||||||| || || | |||||| ||| Sbjct 37664 AGTCTCAGTACAAGATGAATGGTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTT 37605 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||||||||| || || ||||| ||||| | | ||||||||| ||||| | ||||||| Sbjct 37604 CCATCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGGGATTCCTTCC 37545 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| |||||| ||| || || || || |||||| ||| || || || || Sbjct 37544 TTGTCCTGTATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGTTCTACTTCCAGGGTA 37485 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || ||||| || |||||||| | ||||||| Sbjct 37484 ATTGTCTTACCAGTGAGTGTTTTTACAAATATCTGCATT 37446 >seq109 Length=56162 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 |||| || ||||| |||| || ||| || || |||||||| || | ||| |||||| Sbjct 25000 AGTCGCAGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAGTCAGAAAGTGTCCTT 25059 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| ||||| || ||||| ||||| || | |||||||| || || | ||||| Sbjct 25060 CCATCTTCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGTCGGGTGGTATCCCTTCT 25119 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || ||||| |||||| || || || || || | |||| ||| || || || || Sbjct 25120 TTATCCTGTATCTTTGCCTTGACATTCTCTATTGAGTCACTTGGTTCTACTTCCAGTGTA 25179 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| || || | |||||| Sbjct 25180 ATTGTCTTCCCAGTGAGTGTCTTCACGAATATCTGCAT 25217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149237595890