Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq103 116 3e-21 seq106 93.3 3e-14 >seq103 Length=70461 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || ||||| || || || ||||| || | | Sbjct 50128 ATGCAGATATTCGTAAAGACACTCACTGGTAAAACCATTACACTTGAAGTAGAACCAAGT 50187 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||||| ||| || ||||||||||| |||| || || ||| Sbjct 50188 GACACAATAGAGAATGTAAAAGCAAAGATACAAGACAAAGAAGGAATACCACCCGACCAA 50247 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 || | ||||| ||||| || ||||| ||||| || | | | |||||| || |||| Sbjct 50248 CAAAGATTAATCTTTGCAGGAAAACAGCTGGAGGATGGAAGAACACTTT--CTGACTACA 50305 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||||||||| ||| | ||| | || ||||| || |||||||| Sbjct 50306 ACATACAAAAAGAAAGTACAATTCATCTTGTCTTAAGACTGAGAGGAGGA 50355 >seq106 Length=63987 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || ||||| ||||| || || || || || || ||||| || | | Sbjct 37446 AATGCAGATATTTGTAAAAACACTCACTGGTAAGACAATTACCCTGGAAGTAGAACCAAG 37505 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | ||||| ||| || ||||| ||||| | || || || || Sbjct 37506 TGACACAATAGAGAATGTAAAAGCAAAGATACAGGACAAGGAAGGAATCCCTCCCGACCA 37565 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||||||||||| | | | || | || ||||| Sbjct 37566 ACAAAGATTAATCTTTGCAGGAAAACAACTGGAAGATGGAAGAACCCTTTCTGACTACAA 37625 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || ||| ||| | ||| | || | || || |||||||| Sbjct 37626 CATCCAGAAGGAGAGCACCATTCATCTTGTACTGAGACTGAGAGGAGGA 37674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008833774488