Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq105 284 1e-71 >seq105 Length=68279 Score = 284 bits (314), Expect = 1e-71 Identities = 593/873 (68%), Gaps = 14/873 (2%) Strand=Plus/Minus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||| ||| | || |||||||| | ||| | | | ||||| ||||||||||| || Sbjct 56077 TACACGCATCTCAAAGAAATTTGCTTTTCTTCGCAGTGAAATTAGCTCCATAAAATCGAA 56018 Query 4331 CGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTAC 4390 || || |||| |||||| ||||| ||||| || | || || || || || || Sbjct 56017 TGGGTTTGTTGTGTTGTAGACCTTTTCTTCATTTAGTGCAATTAGTAACCGATCTGCCAC 55958 Query 4391 AAATTCTATATACTGGCTCAT-GAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCG 4449 ||| || || ||||||| ||| |||| | |||| || || ||||| ||||| || | Sbjct 55957 AAACTCAATGTACTGGCACATAGAGTCTG-AGTTGATGCCTATTAAAGAAACAGGAAGTG 55899 Query 4450 CGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTAT 4509 | | || |||||||||| ||| || || || ||| | ||| | || || || Sbjct 55898 CATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTCTAAAACTATTTTCTTGATATT-- 55841 Query 4510 CTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAAC 4569 ||| | |||||| | || || ||| | ||| ||||| ||||| || | | Sbjct 55840 CTTACACTTGTTTATGAGGTGAGAATGTAAA----AGACAGGCAAAGTCACAGTGAAGTC 55785 Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| |||||||| ||||| |||||||| || || | || ||||| | |||||||| | Sbjct 55784 CTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGCATAAGGCCTCTCTTCT 55725 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 ||||||| || || | |||||||| ||||| |||||||| || ||||| ||||| | Sbjct 55724 TAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATATTCCCTCTACACATGCAAAAG 55665 Query 4690 CTACTAATCGGGACCCGAA-CGAG-CTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747 | |||| | | | || | || || | |||||| ||||| | | ||||||| Sbjct 55664 CAACTAGCCTGTCTGCAAAGCTAGACT--CCTTGTCTGATATCCACCTAAGGGCCCAGTC 55607 Query 4748 AGCTTT-TTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAA 4806 || || ||| ||| || ||||| | | || || | ||||| | ||||| Sbjct 55606 TGCCTTCTTTTTTATTACA-GGAATATTCTCCATTGCCTGGAATAAGAAGTTCTTTTCTG 55548 Query 4807 ATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTA 4866 | || | || || ||||||||||||| |||||||| || | ||||| ||||||| Sbjct 55547 CAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACATCTCTGCGTGTATGTTTTCTA 55488 Query 4867 TAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 | ||| || |||||||| || ||||| || || ||| ||||||||| | ||| | Sbjct 55487 TCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGAACTTCTGAAGCAAACC 55428 Query 4927 TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAG 4986 |||| ||||||||||| ||||| || || || ||| ||||| || || | |||| | Sbjct 55427 TTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAGAATGCAAGTACATAGG 55368 Query 4987 ATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAAT 5046 | ||||||| || | | || || |||| ||||| | || || | || | Sbjct 55367 AGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTCAGCTTGGTCATTTGACAAGT 55308 Query 5047 CAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAG 5106 |||||||||| ||||||| || || | || | ||| ||||| | |||||||||| Sbjct 55307 CAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCTTTATACATTGCCCAAATATCAT 55248 Query 5107 GATACTGAATCGGAAGTATGACAAATCTGTTGT 5139 ||| || || || | || |||||||| |||| Sbjct 55247 GATGCTCTATTGGGAAAATAACAAATCTATTGT 55215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048631931938