Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq35 284 2e-71 seq105 280 2e-70 >seq35 Length=104599 Score = 284 bits (314), Expect = 2e-71 Identities = 954/1471 (65%), Gaps = 32/1471 (2%) Strand=Plus/Minus Query 76772 CTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACC 76831 |||||| | || |||| ||||| || | ||||| || || | ||| || | || Sbjct 79415 CTTATCTACGGTGAACTTAATTGCAGCTTGGGATGGTTTGGTTCGCAAATAATAAGTTCC 79356 Query 76832 AGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGG 76891 ||||| || ||| ||||||||||||| ||||||||||| |||| || | | | || Sbjct 79355 TGTTTTAAGTCCCTTTTTCCATCCGTAGAAGTGCATGCTTGTTAGTTGGGCAAAGGTTGG 79296 Query 76892 ATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGC 76951 | || ||||| ||||||||||||||||| || | | || ||||| || || || Sbjct 79295 TGTAGAAATGTGAATGTTCATCGACTGACTTTGGTCAACATATGCACCTCTGTCTGCTGC 79236 Query 76952 CATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATC 77011 | | || | | || || |||||||||| ||||||| | | |||||||||| Sbjct 79235 CTGATCAATTACAGCTTTCTGCTTTATTTCCCAAACAGTTTTGTACAGCTGTTTGATATT 79176 Query 77012 ATCTGGAAGGTTTG---TATTTTGAATGGAACCACCAT-CTGATATAATTGTATTCTTTA 77067 ||| || | | | | | ||||| || || || ||| || | ||||| | ||||| | Sbjct 79175 ATCAGGTATGCTGGGGATGTTTTGGATTGATCCTTCATGCTCA-ATAATAATGTTCTTCA 79117 Query 77068 TATCATCATTCCACAATTTCCT--CTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125 | || ||||| ||| |||| || | | | | | |||| ||| || || Sbjct 79116 TCTCTGGCCCCCACA--GGCCTAAATCTGCTAGATTTTTTACCAAGTGAGAATTCACAAT 79059 Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185 ||| |||||||| || | | ||| | ||||| ||||||||||| | || | | Sbjct 79058 TTGGAATTCTCCTGAGAGTGTTCTTCTGGTGTATATATTACTGGTGAAACCCTCAAAGCA 78999 Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245 ||||| ||| | |||||| | || || || |||||||| | ||||| || ||||| Sbjct 78998 CTCATTAAATCCAAGAATTTGGGAGGTTGAGGCGGTTGGCATGAGAGCCACTAACAAACT 78939 Query 77246 ATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGA 77305 ||||| | |||||| | ||| || | ||| ||| ||| ||||| | || || Sbjct 78938 ATTTCGTACACCATGGGCAGCGATCTTCTTTTTAAGACCAGCCCAGTCCCATTGGTCAGA 78879 Query 77306 AGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGA--TCCATTA 77363 ||| ||| |||| | ||| || || || ||||| || || || | || || | Sbjct 78878 AGGCTGGACACCCCACATATCATACTGCAGTATTCCCTTGCT--CACAGGACTGCCTGCA 78821 Query 77364 TATGTTTCATAAG----GTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCC 77419 |||| || || | || ||||||| || |||||| || || | || || Sbjct 78820 TATGACTCGTATGGGCCGTACTTCTGT----GCCAGTTCATTTGATGCCTCAAGCGCACC 78765 Query 77420 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGG 77479 | ||||| ||||| || || || || | ||| |||||| | || ||||| || Sbjct 78764 AAAGTAAATGGTTTCAAATATTGCTTTGTTTAACTCTGCTGCTTCCTTGCTCTCAAATGG 78705 Query 77480 ATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATG 77539 ||| | |||||| | ||||||||| ||||| || || || || ||||| | || Sbjct 78704 ATACCCCATAAGAATGTATACATCTGCTAGCCCCTGTACACCCATTCCTATAGGGCGGTG 78645 Query 77540 TCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATT 77599 || |||| ||| | ||||||| | | || || | || | || || ||||| || Sbjct 78644 CTTCATATTAGAATTCTTAGCTTGTTCTAATGGGTATTTGTTTACATCAATGATTTTGTT 78585 Query 77600 GAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATC 77659 || ||| | | |||| ||| | || |||||||| ||| || | ||| ||| | Sbjct 78584 CAGGTTTTTGGCTACTATTTTTGCGACCTCCTTTAGCTTATTGAAGTTAAA--TTCATTG 78527 Query 77660 TATAACAAACATGTTCAAA--GCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCG 77717 | | | ||||| || || | ||||| || ||||| || || | ||||| | Sbjct 78526 TTTTCAATGTATGTTGGAAGTGCAAGTGATGCCAGGTTACACACCGCAATTTCATTTGGA 78467 Query 77718 TTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGT 77777 | | || | | ||||| | ||| | || || | ||||| || ||||| || Sbjct 78466 TCTGTGTACTCAACAATCTCAGCACACAAGTTGCTTCCCTTGATCACTCCAAGATTCTGC 78407 Query 77778 TGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATC 77837 |||||||||||| | || || ||| ||||| ||||| |||| || ||||||||| Sbjct 78406 TGGTTGCTCTTTCTGTTACAGCTGTCTTTATAGAGAATGTACGGTACACCTGTTTCAATC 78347 Query 77838 TGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCA--TAGATTTGTATCGCC 77895 | || || | ||| | ||||| | ||| ||| | || | | | || | Sbjct 78346 TCTGCCTCAAGAATTGCCTTCCACAGCTTTCTTGCTGGAACCACCTTCTTCTCAATTCTC 78287 Query 77896 TC-TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT 77954 || ||| |||| || || ||| ||| ||||||||||||||| | || | || Sbjct 78286 TCTTCTTTTTCGTACTGTACATACAGCTCTTCAAATTCATCTCCGTACTTCTCGTGCAGG 78227 Query 77955 CC--AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCA 78012 || | ||| ||| ||||| | | | ||| || || ||||| | ||||| |||| Sbjct 78226 CCTTTTGCCAT--ATTGGGGCAAAATAGCGCCCAATCCCCGTCTTCTTCAACTCTCTTCA 78169 Query 78013 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTC 78072 |||| | ||||||| |||||| | | || | || || | || |||||| || | Sbjct 78168 TAAATAAGTCAGGTACCCATAGTCCTAAGAACAAATTTCTTGCCCTCATTTCTTCCTTAC 78109 Query 78073 CTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 78132 | ||||||||| | | ||| | ||| || | || || |||||||| || | ||| | Sbjct 78108 CCGTATTCTTTCTCAAATCTAAAAAGTCAAATATGTCTCTGTGCCATGGCTCAATATACA 78049 Query 78133 TTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTAT 78192 | || |||||| | |||||||||||||| || | ||| | | ||| || | Sbjct 78048 CAACAATTGATCCAGGCCTCTTATTACCTCCCTGGTCAACATACTTTGATGTGGCATCAA 77989 Query 78193 AAACTCTCAACATTGGAATAATACCGTTAGA 78223 | ||||||| ||| ||||| || || || || Sbjct 77988 ACACTCTCAGCATAGGAATTATCCCATTTGA 77958 >seq105 Length=68279 Score = 280 bits (310), Expect = 2e-70 Identities = 422/595 (71%), Gaps = 11/595 (2%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| ||||| ||||| ||||||||||| || || | |||||||| || || || Sbjct 55807 ACAGGCAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAG 55748 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||| ||||| || || | || || ||||| || |||| || || |||||||| ||||| Sbjct 55747 ACCTGGCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAA 55688 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-- 48317 ||| || ||||| ||||| || || || ||| | | || | || |||| | Sbjct 55687 TATTCCCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGA 55628 Query 48318 -ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||||| | ||||| || |||||||| |||| ||| || | || || || | Sbjct 55627 TATCCACCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTG 55568 Query 48377 AAAGAGAAAGtttttttCATTGC--TATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 || | ||||| ||||| ||| |||| || | ||| || ||||||| | ||||||| Sbjct 55567 GAATAAGAAGTTCTTTTC--TGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATAC 55510 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 || || | ||| || ||||| || || || |||||||| |||||||| || || | Sbjct 55509 ATCTCTGCGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTT 55450 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 || || || || | | ||| | |||| | || || |||||||| |||||||| ||| Sbjct 55449 ATTTGAACTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCA 55390 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614 ||||| ||||| | ||||| ||||| | | | || || | | | || || | |||| Sbjct 55389 GCAAAGAATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAG 55330 Query 48615 TCA--TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 ||| ||| | | ||||| | || |||||||| || ||||| ||| |||| |||| | Sbjct 55329 TCAGCTTGGT--CATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCAT 55272 Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATT 48727 ||||||||| ||| |||||| | | ||||||||||||||||||||||| Sbjct 55271 CTTTATACATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTATT 55217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667184895040