Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq35 327 2e-84 seq105 288 1e-72 >seq35 Length=104599 Score = 327 bits (362), Expect = 2e-84 Identities = 958/1467 (65%), Gaps = 24/1467 (2%) Strand=Plus/Minus Query 75367 CTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACC 75426 |||||| | ||||||| ||| | || | |||||| || || | ||| || | || Sbjct 79415 CTTATCTACGGTGAACTTAATTGCAGCTTGGGATGGTTTGGTTCGCAAATAATAAGTTCC 79356 Query 75427 AGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGG 75486 ||||| || ||| ||||||||||||| |||||||||||||||| || | | | || Sbjct 79355 TGTTTTAAGTCCCTTTTTCCATCCGTAGAAGTGCATGCTTGTTAGTTGGGCAAAGGTTGG 79296 Query 75487 ATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGC 75546 | || ||||| ||||||||||||||||| || | | || ||||| || || || Sbjct 79295 TGTAGAAATGTGAATGTTCATCGACTGACTTTGGTCAACATATGCACCTCTGTCTGCTGC 79236 Query 75547 CATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATC 75606 | | || | | || || |||||||||| ||||||| | | |||||||||| Sbjct 79235 CTGATCAATTACAGCTTTCTGCTTTATTTCCCAAACAGTTTTGTACAGCTGTTTGATATT 79176 Query 75607 ATCTGGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGAT 75663 ||| || | | | | ||||| || ||||| ||| ||||| | ||||| || Sbjct 79175 ATCAGGTATGCTGGGGATGTTTTGGATTGATCCTTCATGCTCAATAATAATGTTCTTCAT 79116 Query 75664 CTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTG 75723 ||| ||||| | || | || | | | | | |||| ||| |||||||| Sbjct 79115 CTCTGGCCCCCACAGGCCTAAATCTGCTAGATTTTTTACCAAGTGAGAATTCACAATTTG 79056 Query 75724 AAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 75783 |||||||| || | | ||||| ||||| ||||||||||| | || | | || Sbjct 79055 GAATTCTCCTGAGAGTGTTCTTCTGGTGTATATATTACTGGTGAAACCCTCAAAGCACTC 78996 Query 75784 ATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATT 75843 ||| ||| | |||||| | ||||| || || ||||| | ||||| || |||||||| Sbjct 78995 ATTAAATCCAAGAATTTGGGAGGTTGAGGCGGTTGGCATGAGAGCCACTAACAAACTATT 78936 Query 75844 TCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGG 75903 || | |||||| | ||| || | ||| ||| ||| ||||| | || || || Sbjct 78935 TCGTACACCATGGGCAGCGATCTTCTTTTTAAGACCAGCCCAGTCCCATTGGTCAGAAGG 78876 Query 75904 TACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGAT--CCATTATAT 75961 ||| |||| | ||| || || || ||||| ||||| || | || || |||| Sbjct 78875 CTGGACACCCCACATATCATACTGCAGTATTCCCTTGCT--CACAGGACTGCCTGCATAT 78818 Query 75962 GTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAA 76021 | ||||| | |||| ||| | || ||||| ||||| | |||||| | ||| Sbjct 78817 GACTCGTATGGGCCGTACTTCTGTGCCAGTTCATTTGATGCCTCAAGCGCACCAAAGTAA 78758 Query 76022 ATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGT 76081 || ||||| || || || || | ||| ||||| || ||||| ||||| Sbjct 78757 ATGGTTTCAAATATTGCTTTGTTTAACTCTGCTGCTTCCTTGCTCTCAAATGGATACCCC 78698 Query 76082 AAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTA 76141 | |||||| || |||||||||| ||||| || || || || ||||| | || || || Sbjct 78697 ATAAGAATGTATACATCTGCTAGCCCCTGTACACCCATTCCTATAGGGCGGTGCTTCATA 78638 Query 76142 TTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTT 76201 || ||| | | ||||| | | ||||| | || | ||| || ||||| || || ||| Sbjct 78637 TTAGAATTCTTAGCTTGTTCTAATGGGTATTTGTTTACATCAATGATTTTGTTCAGGTTT 78578 Query 76202 CTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATCACA 76261 || | |||| ||| | || |||||||| || || | ||||| ||| | || Sbjct 78577 TTGGCTACTATTTTTGCGACCTCCTTTAGCTTATTGAAGTTAAATT---CATTGTTTTCA 78521 Query 76262 AAC-ATATT--AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA 76318 | || || ||| || | ||||| || ||||| || || | ||||| | || | Sbjct 78520 ATGTATGTTGGAAGTGCAAGTGATGCCAGGTTACACACCGCAATTTCATTTGGATCTGTG 78461 Query 76319 TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTG 76378 || | | ||||| | || | || || | |||||| ||||||||| || |||||| Sbjct 78460 TACTCAACAATCTCAGCACACAAGTTGCTTCCCTTGATCACTCCAAGATTCTGCTGGTTG 78401 Query 76379 CTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGAT 76438 |||||| ||||||| ||| ||||| |||| |||| || |||||||||| || Sbjct 78400 CTCTTTCTGTTACAGCTGTCTTTATAGAGAATGTACGGTACACCTGTTTCAATCTCTGCC 78341 Query 76439 TCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTC-- 76496 || | ||| | ||||| | ||| ||| | | || | || ||||||| Sbjct 78340 TCAAGAATTGCCTTCCACAGCTTTCTTGCTGGAA--CCACCTTCTTCTCAATTCTCTCTT 78283 Query 76497 ---TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC-- 76551 |||| || ||| ||| | | ||||||||||||||| | || | || || Sbjct 78282 CTTTTTCGTACTGTACATACAGCTCTTCAAATTCATCTCCGTACTTCTCGTGCAGGCCTT 78223 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 | ||| ||| || || | | | ||| || || ||||| | ||| | |||||||| Sbjct 78222 TTGCCAT--ATTGGGGCAAAATAGCGCCCAATCCCCGTCTTCTTCAACTCTCTTCATAAA 78165 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 | ||||||| |||||| | | || | || || | || |||||| || || || Sbjct 78164 TAAGTCAGGTACCCATAGTCCTAAGAACAAATTTCTTGCCCTCATTTCTTCCTTACCCGT 78105 Query 76672 ATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 ||||||| | | ||||| || || | || || |||||||| || | ||| | | Sbjct 78104 ATTCTTTCTCAAATCTAAAAAGTCAAATATGTCTCTGTGCCATGGCTCAATATACACAAC 78045 Query 76732 CATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAAC 76791 || || || | |||||||||||||| || | ||| | | ||| || | | || Sbjct 78044 AATTGATCCAGGCCTCTTATTACCTCCCTGGTCAACATACTTTGATGTGGCATCAAACAC 77985 Query 76792 TCTCAACATTGGAATAATGCCGTTAGA 76818 ||||| ||| ||||| || || || || Sbjct 77984 TCTCAGCATAGGAATTATCCCATTTGA 77958 >seq105 Length=68279 Score = 288 bits (318), Expect = 1e-72 Identities = 422/593 (71%), Gaps = 7/593 (1%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| ||||| ||||| ||||| ||||||||||| || || | |||||||| || || || Sbjct 55807 ACAGGCAAAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAG 55748 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 || ||||| || || | ||| || ||||| || || | || || |||||||| ||||| Sbjct 55747 ACCTGGCATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAA 55688 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT--GA 46806 ||| || |||||| || || || || || || ||| | | || | || || | || Sbjct 55687 TATTCCCTCTACACATGCAAAAGCAACTAGCCTGTCTGCAAAGCTAGACTCCTTGTCTGA 55628 Query 46807 -ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 |||||||| | ||||| || ||||| || |||| ||| || | || || || | Sbjct 55627 TATCCACCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGGAATATTCTCCATTGCCTG 55568 Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 || | ||||| ||||| || |||| || | || || ||||||| | ||||||||| Sbjct 55567 GAATAAGAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACAT 55508 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985 |||| || |||||||| || || || |||||||| ||||||||||| || | || Sbjct 55507 CTCTGCGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTAT 55448 Query 46986 CTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 || || |||| | ||| | |||| || || ||||| || |||||||| ||||| Sbjct 55447 TTGAACTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGC 55388 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTC 47105 ||| ||||| | ||||| ||||| | | | |||| | | | || || | |||||| Sbjct 55387 AAAGAATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTC 55328 Query 47106 A--TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163 | ||| | | ||||| | || |||||||| || ||||||||| ||| |||| | | Sbjct 55327 AGCTTGGT--CATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCT 55270 Query 47164 TTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATT 47216 |||||||| ||| |||||| ||| | || || ||||||||||||||||| Sbjct 55269 TTATACATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTATT 55217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712932742427520