Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq103 131 4e-25 seq106 118 2e-21 seq109 113 1e-19 >seq103 Length=70461 Score = 131 bits (144), Expect = 4e-25 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | ||||||||||| ||| |||||||| |||||||| || | | ||| Sbjct 50348 CTCAGTCTTAAGACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGAAAGTGTT 50289 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| || || ||| || || ||||| | || || ||||| | | |||||| Sbjct 50288 CTTCCATCCTCCAGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGGTATTCCT 50229 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCA 152060 || || ||||| || ||| ||| ||| |||||| |||| ||| ||||||||| Sbjct 50228 TCTTTGTCTTGTATCTTTGCTTTTACATTCTCTATTGTGTC---ACTTGGTTCTACTTCA 50172 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| || ||||| ||||| ||||| | |||||| Sbjct 50171 AGTGTAATGGTTTTACCAGTGAGTGTCTTTACGAATATCTGCAT 50128 >seq106 Length=63987 Score = 118 bits (130), Expect = 2e-21 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| || |||||||||| || ||| || ||||||||||| || | | ||| Sbjct 37667 CTCAGTCTCAGTACAAGATGAATGGTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGGGTT 37608 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| || ||| || || ||||| | || || ||||| | | ||||||| Sbjct 37607 CTTCCATCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGAGGGATTCCT 37548 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| || || || ||| ||| ||| |||||| |||| ||| |||||||| Sbjct 37547 TCCTTGTCCTGTATCTTTGCTTTTACATTCTCTATTGTGTC---ACTTGGTTCTACTTCC 37491 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || ||||| || || || || | ||||||| Sbjct 37490 AGGGTAATTGTCTTACCAGTGAGTGTTTTTACAAATATCTGCATT 37446 >seq109 Length=56162 Score = 113 bits (124), Expect = 1e-19 Identities = 160/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||| || |||||||||| ||| ||| || || ||||| || || | | || Sbjct 24997 CTCAGTCGCAGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAGTCAGAAAGTGTC 25056 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||||||||| ||| || || ||||| || ||||| ||||| | | || ||| Sbjct 25057 CTTCCATCTTCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGTCGGGTGGTATCCCT 25116 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || || || || ||| |||||| |||||| ||| ||| |||||||| Sbjct 25117 TCTTTATCCTGTATCTTTGCCTTGACATTCTCTATTGAGTC---ACTTGGTTCTACTTCC 25173 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || ||||| ||||||||||| | |||||| Sbjct 25174 AGTGTAATTGTCTTCCCAGTGAGTGTCTTCACGAATATCTGCAT 25217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153818050300806