Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq105 277 2e-69 >seq105 Length=68279 Score = 277 bits (306), Expect = 2e-69 Identities = 603/886 (68%), Gaps = 20/886 (2%) Strand=Plus/Minus Query 23219 TTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAA-TGATATATTT 23277 ||| ||| || || ||||| | || || ||||||| ||| | || | ||| || Sbjct 56090 TTTTATACTCACCTACACGCATCTCAAAGAAATTTG-CTTTTCTTCGCAGTGAAATTAGC 56032 Query 23278 TCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT--AATTCCTTTA 23335 ||||||||||| ||||| || | || || || || |||| | | || | | | ||| Sbjct 56031 TCCATAAAATCGAATGGGTTTGTTGTGTTGTAGAC--CTTTTCTTCATTTAGTGCAATTA 55974 Query 23336 AAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTA 23395 | || |||||| ||||| ||||| || || ||||| | || |||| || ||||||| Sbjct 55973 GTAACCGATCTGCCACAAACTCAATGTACTGGCACATAGAGTCTGAGTTGATGCCTATTA 55914 Query 23396 GTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTA 23455 || |||| |||||| ||| || ||||||||| ||| || ||| || || Sbjct 55913 AAGAAACAGGAAGTGCATCAGTTAAAAACTCTTTTTCAATCTCAACTGCCTCTAAAACTA 55854 Query 23456 TTTGAACAATAACTTCTT-CACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCA 23514 ||| ||| ||||| |||| | | | | | | | |||| | ||| ||| Sbjct 55853 TTTTCTTGATA--TTCTTACACTTGTTTATGAGGTGAGA-ATGTAAA----AGACAGGCA 55801 Query 23515 AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGC 23574 || ||||| || || |||||||| || || |||| || ||||| || || | |||||| Sbjct 55800 AAGTCACAGTGAAGTCCTTCATCTCTGCTGATCAGCTCGTTAGAGAAAGTAAGACCTGGC 55741 Query 23575 ATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCC 23634 || | |||| || |||| ||| || |||| ||||||||||| || ||||| || ||| Sbjct 55740 ATAAGGCCTCTCTTCTTAAGCCAGAAAATTGATGCAAATGATCCAGAGAAGAATATTCCC 55681 Query 23635 TCAACAGCCGCAAAGGCCACAAGACGTGTAC-CAAATGTTGCATTATAATCAGAAATCCA 23693 || ||| ||||| || || || | ||| |||| | | | | || || ||||| Sbjct 55680 TCTACACATGCAAAAGCAACTAGCC-TGTCTGCAAAGCTAGACTCCTTGTCTGATATCCA 55622 Query 23694 tttttttGTCCAATTAGCCTTCAATTTTAC-ACACTCAATTGTTTCAATTGCTTTTAAGA 23752 | | ||| | |||||| ||||| ||| ||| | || ||||| | || | Sbjct 55621 CCTAAGGGCCCAGTCTGCCTTCTTTTTTATTACAGG-AATATTCTCCATTGCCTGGAATA 55563 Query 23753 GAAAAGTT-TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCA 23811 | ||||| |||||| || |||| | || || || || ||||||||||||||||| || Sbjct 55562 -AGAAGTTCTTTTCTGCAGTATCCTTGATGTAGGTGTCTATTAGTAAACTATACATCTCT 55504 Query 23812 GAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGA 23871 | || || ||||| || ||| || || || || |||||||| || || | |||| Sbjct 55503 GCGTGTATGTTTTCTATCATAATTTGGAATCCGTAGAAACATCTTGCCTCGCTTATTTGA 55444 Query 23872 ACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAG 23931 || || | ||| |||| | |||| ||||| || ||||| ||||| ||||||||| Sbjct 55443 ACTTCTGAAGCAAACCTTTCAACTAAGTTTTCATTTACAATTCCATCTGAGGCAGCAAAG 55384 Query 23932 AAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATTA 23991 || ||||| ||||| ||||| ||||| |||| | || |||| ||| ||| Sbjct 55383 AATGCAAGTACATAGGAGATAAAGTGTCTCTCATTTGCATTTAGCTTTTCCCAGTCAGCT 55324 Query 23992 ATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATAC 24051 || ||||| || |||||||| || | ||||| || ||||| ||| |||||| Sbjct 55323 TGGTCATTTGACAAGTCAACTTCTTCTGCAGTCCAGAATACTGCCACTGCATCTTTATAC 55264 Query 24052 ATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTAT 24097 ||| ||||||||||| ||| | |||||| || || || ||||||| Sbjct 55263 ATTGCCCAAATATCATGATGCTCTATTGGGAAAATAACAAATCTAT 55218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521486787540400