Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq106 120 2e-22 seq109 111 1e-19 seq103 102 6e-17 >seq106 Length=63987 Score = 120 bits (132), Expect = 2e-22 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| ||||||||||||| || || |||| ||||||||||| ||||||||||| || | Sbjct 37674 TCCTCCTCTCAGTCTCAGTACAAGATGAATGGTGCTCTCCTTCTGGATGTTGTAGTCAGA 37615 Query 44170 GAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 || || || | || ||||| || || || |||||||| || | || || || | | Sbjct 37614 AAG--GGTTCTTCCATCTTCCAGTTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGA 37557 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| |||||| ||||| | ||| |||| ||||| | ||| Sbjct 37556 GGGATTCCTTCCTTGTCCTGTATCTT-TGCTTTTACATTCTCTATTGTGTCACTTGGTTC 37498 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| ||||| ||||| || ||||| || || || || || ||||| Sbjct 37497 TACTTCCAGGGTAATTGTCTTACCAGTGAGTGTTTTTACAAATATCTGCAT 37447 >seq109 Length=56162 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 ||||||||||||||| || || || |||| ||| |||||||| || ||||| || || | Sbjct 24989 TTCCCCCTCTCAGTCGCAGTACAAGATGAATCGTACTCTCCTTCTGTATGTTATAGTCAG 25048 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 ||| | | || || ||||| || || |||||||| | | ||| || || | | Sbjct 25049 AAAGTGTCCTTCCATCTTCTAGCTGTTTTCCTGCAAAGATTAGTCTCTGTTGGTCGGGTG 25108 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287 | | ||||| || ||| |||||| ||| | | ||| |||| | ||| | ||| Sbjct 25109 GTATCCCTTCTTTATCCTGTATCTT-TGCCTTGACATTCTCTATTGAGTCACTTGGTTCT 25167 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| ||||| ||||| || ||||| ||||||||||| || ||||| Sbjct 25168 ACTTCCAGTGTAATTGTCTTCCCAGTGAGTGTCTTCACGAATATCTGCAT 25217 >seq103 Length=70461 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| ||||||||||| || || || |||| || || || ||||| |||||||| || | Sbjct 50355 TCCTCCTCTCAGTCTTAAGACAAGATGAATTGTACTTTCTTTTTGTATGTTGTAGTCAGA 50296 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 ||| | | || |||||||| || || |||||||| || | || || || | || Sbjct 50295 AAGTGTTCTTCCATCCTCCAGCTGTTTTCCTGCAAAGATTAATCTTTGTTGGTCGGGTGG 50236 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCA 44288 | ||||| || || |||||| ||||| | ||| |||| ||||| | ||| | Sbjct 50235 TATTCCTTCTTTGTCTTGTATCTT-TGCTTTTACATTCTCTATTGTGTCACTTGGTTCTA 50177 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || | ||||| || || || ||||| ||||| ||||| || |||||| Sbjct 50176 CTTCAAGTGTAATGGTTTTACCAGTGAGTGTCTTTACGAATATCTGCATG 50127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989583946762