Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematocida_20sp._20ERTm5_20[genbank_20GCA_5F001642415.1_202016-05- 11] 186 sequences; 4,397,606 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq103 152 1e-31 seq106 150 4e-31 seq109 134 3e-26 >seq103 Length=70461 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || ||||| || || || || || ||| ||| Sbjct 50131 CAGATATTCGTAAAGACACTCACTGGTAAAACCATTACACTTGAAGTAGAACCAAGTGAC 50190 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| |||||| || |||||||||||||| || || ||||| ||| Sbjct 50191 ACAATAGAGAATGTAAAAGCAAAGATACAAGACAAAGAAGGAATACCACCCGACCAACAA 50250 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||||||||| || |||||||| || ||| | || || ||| | Sbjct 50251 AGATTAATCTTTGCAGGAAAACAGCTGGAGGATGGAAGAACACTTTCTGACTACAACATA 50310 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||| ||| | |||||||| || ||||| ||| Sbjct 50311 CAAAAAGAAAGTACAATTCATCTTGTCTTAAGACTGAGA 50349 >seq106 Length=63987 Score = 150 bits (166), Expect = 4e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| ||||| || || || || ||||| || || ||| ||| Sbjct 37450 CAGATATTTGTAAAAACACTCACTGGTAAGACAATTACCCTGGAAGTAGAACCAAGTGAC 37509 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct 37510 ACAATAGAGAATGTAAAAGCAAAGATACAGGACAAGGAAGGAATCCCTCCCGACCAACAA 37569 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| || ||||||||||| || ||| | || || ||| || Sbjct 37570 AGATTAATCTTTGCAGGAAAACAACTGGAAGATGGAAGAACCCTTTCTGACTACAACATC 37629 Query 178104 CAAAAAGA-ATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || | || || | |||||||| ||||||| ||| Sbjct 37630 CAGAAGGAGAGCACCA-TTCATCTTGTACTGAGACTGAGA 37668 >seq109 Length=56162 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || || || || || || ||| ||| Sbjct 25214 CAGATATTCGTGAAGACACTCACTGGGAAGACAATTACACTGGAAGTAGAACCAAGTGAC 25155 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| ||||| |||||| ||||| |||||||| || || || ||||| || Sbjct 25154 TCAATAGAGAATGTCAAGGCAAAGATACAGGATAAAGAAGGGATACCACCCGACCAACAG 25095 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || ||||||||||| |||||||||||||| ||| | || |||||| | Sbjct 25094 AGACTAATCTTTGCAGGAAAACAGCTAGAAGATGGAAGGACACTTTCTGACTATAACATA 25035 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || | |||||||| || |||| ||| Sbjct 25034 CAGAAGGAGAGTACGATTCATCTTGTACTGCGACTGAGA 24996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728331358084