Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq46 87.8 4e-12 >seq46 Length=72868 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 281546 TACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACT 281605 ||| || ||| |||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 15793 TACAATATCTAATGGATTAAAATTAGGGATGTTTGTAGACCAACCTGTTCCAATACCTTC 15852 Query 281606 TGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATC 281665 || ||||| ||||| | | || |||||||| ||||| || |||||||| || | Sbjct 15853 TGCCCCATTAACCAATACCATAGGAATAATAGGAACATACCACTCTGGTTCGATCGATTG 15912 Query 281666 ACCATCATCATACAAATACTTCAGAAGGTTATCATCTG 281703 | || |||| ||||| |||| || |||||||| Sbjct 15913 ATTCTCTTCATCTAAATATTTCAAAATTAAATCATCTG 15950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057816735393680