Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 226 3e-54 >seq2 Length=91783 Score = 226 bits (250), Expect = 3e-54 Identities = 577/866 (67%), Gaps = 14/866 (2%) Strand=Plus/Minus Query 15931 tttttCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATT 15990 ||| || ||||| || ||||| || ||||| |||||||||||||||||| |||||||| Sbjct 37491 TTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATATTTTCCATAAAATCGAAGGGATT 37432 Query 15991 -AGTAGCTGAAAATATCT-TAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAAT 16048 ||| | ||||| | | ||| || | || ||| ||||||||| ||||||||| Sbjct 37431 CAGTGTATTGTAATATTTCTCAAGT-CCTAAATTAATTAA-TAATCTATCAGCTACAAAT 37374 Query 16049 TCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTT 16108 || |||||||||||||| | | ||||| || || ||||| |||||| | | Sbjct 37373 TCAATATATTGACACATAAGCTTACAATTCATCCCAATAAGATTTACCGGTAAACTGACA 37314 Query 16109 GTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCA 16168 ||| ||||| || ||||| | ||||||||||| | ||||| | |||| Sbjct 37313 CTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACTATATCAA--GAATGTGT---- 37260 Query 16169 GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCG 16228 | || | ||| ||| | || | | | ||| |||||||| ||||| | ||||| Sbjct 37259 GGCGATTTATTAATTAAATATTGATTTAGCAAACAAGCGAAGTCACAATGCAACCCTTCA 37200 Query 16229 TCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAAC 16288 || || || | ||| || || ||||| | || ||||| |||| ||||||| | Sbjct 37199 TCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGCATAAGACCTCTGTTCTTTAGC 37140 Query 16289 CAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATT 16348 ||||| || | ||||||| || ||||| ||||| || || || | |||||||| || Sbjct 37139 CAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCTTCTACGCACGCAAAAGCAATG 37080 Query 16349 AATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTT 16408 | ||| |||| | | | | || || ||||||||| || |||| || ||||| Sbjct 37079 ACGCGTGTCGCGAATGATGATTTTTCATCTTTAATCCATTTAAGTGCCCAGTCAGCTTTC 37020 Query 16409 TGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA-ATTTCTCTTTTTCCTGAATATC 16467 | ||||||||| || || ||| || ||||| | || | | |||||| | ||| Sbjct 37019 TTTTTTATACATGGAATAGTACTTATCGCATTAAAGAGATGTGT-TTTTTCATCTTGATC 36961 Query 16468 GATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTAT 16527 | ||||| | ||| || | ||| ||||| || || || || |||||||||| Sbjct 36960 TGTAATATAAGCATCTATTAATAATGAATACATCTCACTATGAATATTTTCTATGGCTAC 36901 Query 16528 CTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGC 16587 ||||||||||| ||||| || || |||| ||||| |||| || | Sbjct 36900 TTGAAATCCATAAAAGCACTTTGCTTCTAATATTGTCACTTCATTAGCGAATCTCTCAAC 36841 Query 16588 CAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 | || | || || ||||| || || |||||||| || || || | ||| || Sbjct 36840 TAAATTGGCGTTAACAATACCATCTGACGCGGCAAAAAATGCTAAAATATTTGAAATAAA 36781 Query 16648 ATATTTTTCGTCA-GATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTT 16706 ||| |||| | | || ||| ||| |||||| ||| || | || ||| |||| Sbjct 36780 GTATCTTTCTTTATCATTTAATGATA-ACCAATCATTTCTGTCGGCAGTTAGATCAACTT 36722 Query 16707 CTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATT 16766 ||||| |||||| || | | | || ||||||||||| | ||| || |||| |||| Sbjct 36721 CTTCTACCGTCCAGAATGATGACTCGGCTTTTTTATACATCTGCCATATGTCATGATATT 36662 Query 16767 GTATGGGAAATACGACGTATCTATCT 16792 || ||||||| || || || ||| Sbjct 36661 TAATAGGAAATAAAACATACCTTTCT 36636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511410973523520