Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 295 8e-75 seq466 212 7e-50 seq504 187 3e-42 >seq2 Length=91783 Score = 295 bits (326), Expect = 8e-75 Identities = 615/904 (68%), Gaps = 33/904 (4%) Strand=Plus/Minus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 |||||| |||| | | | ||| || || ||||| ||||| ||| |||| |||||| Sbjct 37512 TTTTTGATATTGTGACTCTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATATT 37453 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAA-TTCAGAAA 23961 |||||| |||||| | ||||| ||| || | | | || ||| || || | || Sbjct 37452 TTCCATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATTAA 37393 Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 | |||||||| || ||||| || |||||| ||| | | ||||||||| || |||| Sbjct 37392 T-AATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATAA 37334 Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 | || || || | | ||| | |||||||||| || || ||||| ||| | | | Sbjct 37333 GATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACTA 37274 Query 24082 TAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 24140 || || | ||| | || | || | ||||| || | | |||||| ||| Sbjct 37273 TA--TCAAGAATGTGTGG-----CGATTTATTAATTAAATATTGATTTAGCAAACAAGCG 37221 Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 || || || || | || || || ||| ||||||||| || || || || || || ||| Sbjct 37220 AAGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGC 37161 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 24260 || || || | || || ||||| || || |||||||||| || ||||| || |||||| Sbjct 37160 ATAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCT 37101 Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTT-TCTCCATAACCGGCGCTGTCATGT---ATCCA 24316 ||||| |||||| ||||| | | | || | | | | | |||| | ||||| Sbjct 37100 TCTACGCACGCAAAAGCAATGACGCGTGTCGCGA-ATGATGATTTTTCATCTTTAATCCA 37042 Query 24317 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 || | ||||| || || |||||||||| ||| || || || ||| ||||||||||| Sbjct 37041 TTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTAAAGAG 36982 Query 24377 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 24436 || ||||||||| |||| ||| ||| | ||| || || | |||||| || Sbjct 36981 ATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATCTCACT 36922 Query 24437 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT-GT- 24494 |||||| ||||| ||||| | ||||||||| || || || | || || |||| | || Sbjct 36921 ATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTC--TAATATTGTC 36864 Query 24495 ACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 24554 ||||| || |||| || ||||||| | || || || || || || |||||| Sbjct 36863 ACTTCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAAAA 36804 Query 24555 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT----CCAATC 24610 || || || | || | ||||| ||| |||| | | | | || || |||||| Sbjct 36803 AATGCTAAAATATTTGAAATAAAGTATCTTTCTT----TATCATTTAATGATAACCAATC 36748 Query 24611 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 24670 ||| | || || || ||| |||||||| || ||||| ||||||| ||| || ||||| Sbjct 36747 ATTTCTGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTTTT 36688 Query 24671 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT------ATTTGG 24724 |||||| | ||| ||||||||||||| ||| ||||| | |||| | || |||||| Sbjct 36687 ATACATCTGCCATATGTCATGATATTTAATAGGAAATAAAACATACCTTTCTTCATTTGG 36628 Query 24725 ATTT 24728 |||| Sbjct 36627 ATTT 36624 >seq466 Length=27249 Score = 212 bits (234), Expect = 7e-50 Identities = 682/1051 (65%), Gaps = 13/1051 (1%) Strand=Plus/Minus Query 52847 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTG 52906 || |||||||| ||||| | || | ||||||| |||||||||||||||| || | | Sbjct 26853 TAATACATTCCAGTTTTCAATCCTCGTTTCCATCCATAAAAATGCATACTTGATAATATC 26794 Query 52907 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 52966 | || | || | ||| | | | ||| | ||||||| ||||||||| || || | Sbjct 26793 GGGTATGTAGGCTTTGCAACAAATAAATTTAGAGATTGAGTTTGATCGACAAATGCCTGC 26734 Query 52967 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AAC 53025 |||||||| |||| | || | || | ||||||||||| |||||||| ||| Sbjct 26733 CTGTCTGCTGCCAAATCGATAACACATTTCATTTTAATTTCCCAAACTGTTTTATATAAC 26674 Query 53026 TCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATAGATCCACCATCTACCATAAT 53082 || ||||| || ||||||| || | || || || ||||| | | | | | ||| Sbjct 26673 TCT-TTAATTTCCTCTGGAATACCACTTATGTTTTGTATTGATCCTTCTTGTTCAACAAT 26615 Query 53083 CCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGG 53142 ||| || || ||| | ||| | || || ||||| | | | |||| | Sbjct 26614 ATAATTTTTTATTTCAGGAGACCACATGTTAAGCTTTATTAAATCATTCATAAGATACCT 26555 Query 53143 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 53202 ||| || | ||||||||||||| | | ||| | |||||| |||||| ||| | || Sbjct 26554 ATTTACCATTTGAAATTCTCCACAAGCTGTTCTTCTAGTGTATATATTAGAAGTAAATGG 26495 Query 53203 TTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 53262 ||| | | |||||||| |||||||| | || ||| || ||||||||||| | Sbjct 26494 TTCAAATGCTTCATTATTATTAAAAATTTGTGATGTGCCTGCTGTAGGCATAGGTGCAAT 26435 Query 53263 CAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCA 53322 |||||| |||||||| ||| ||| || ||||| | | || |||||||||||| Sbjct 26434 TAATAAAGAATTTCTAACACCATATTTTAAAATTTTTTTTCGTAACTCTTCCCAATTCCA 26375 Query 53323 AAGATCCGACGGTACAA-CNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACG 53381 | ||| ||| || || | ||| || ||||| | Sbjct 26374 TCTA-CCGGTAGTAGAAGAATTTGCCATTTCCCAGTGGAAAATGCCTTTACTAATTGGTG 26316 Query 53382 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 53441 |||| ||| | || || || || | |||||||| |||||| | || || | Sbjct 26315 ATCCGTTATAAGATTCATACGGCCCGTATTTCTCAGCCTCCTCACAAGAAGATTCCAAAG 26256 Query 53442 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 53501 |||| |||| | ||||| || || | || || || | | |||| | ||| ||| Sbjct 26255 CACCAAAATATAGTGTTTCAAATATTTCTTTGTTAAGTTTTCGTGCCCCTTCGCTTTCAT 26196 Query 53502 ATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 | || |||| |||| | | ||| | || |||| |||||||||||| | ||| ||||| Sbjct 26195 AAGG-TAATCTAAGCATTAAAAAAACATCGGCTAGTCCTTGAACACCCAGACCTATAGGC 26137 Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620 |||||| | || ||| | || |||||| || ||||||| | ||| ||| |||| | Sbjct 26136 CTATGTTTTTTGTTACTTTTCTCTGCTTCTTTAAGAGGATAAAAGTTACAATCAATAACT 26077 Query 53621 TTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGT 53680 |||| ||| | | || ||| || || || | | ||| ||||||| | Sbjct 26076 ATATTAGCATTTTTAGTTACTATTTTTACAACTGATTTAAATAAATTAAAGTCAAATTCT 26017 Query 53681 CCATCTATTACAAACAT-GTTCAATGCA-ATAGATGCCAGATTACAAACGGCTACCTCAT 53738 |||| |||||||| | | | || || ||| |||| || || || ||||| |||| Sbjct 26016 CCATTAATTACAAATTTCGGTAAA--CATATACTAGCCAAGTTGCATACTGCTACTTCAT 25959 Query 53739 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 53798 | | | ||||||| || || || || || ||| ||| | || || || | || Sbjct 25958 CTGGACTGGTGTATTGTACAATTTCTGTACAGAGGTTAGAACATCTAATTGTACCAATAT 25899 Query 53799 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTT 53858 | | ||||||||| || || | ||| ||||| | ||| | || |||||||||| Sbjct 25898 TCTTTTGATTACTTAAATTATTTATAGTATCTTTATACAACATGTAGGGTGTACCAGTTT 25839 Query 53859 CAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 |||| || || || ||||| || |||||||| Sbjct 25838 CAATTTGTGACTCAATAATAGCCTTCCAGAC 25808 >seq504 Length=119805 Score = 187 bits (206), Expect = 3e-42 Identities = 852/1336 (64%), Gaps = 24/1336 (2%) Strand=Plus/Plus Query 52843 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAG 52902 || ||| ||||| || ||||||| ||| | || | |||||||||||||| |||| Sbjct 9226 TAAATAATACATGCCAGTTTTTAATCCGCTCTTAAATGCATAAAAATGCATACTGCTTAG 9285 Query 52903 TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAG-G 52961 ||| |||||| | || | ||| | | ||| | || ||| ||||||||| || | Sbjct 9286 TTTAGAATAAGTGGGCTGTGCCACGAATAAATTTAATGACTGAGATTGATCGATAAAAAG 9345 Query 52962 CTCCCCTGTCTGCAGCCATTTTTATGAT---CGTCTTTTGTGGAATTTCCCAAATAGTTT 53018 || | || ||||| | | ||| | | || ||| | | |||||| ||||| Sbjct 9346 CTGACGA-TCAGCAGCTAAATCTATCACATGCTTCATTTTTAG---TTCCCATGCAGTTT 9401 Query 53019 TATAAACTCGCTTAATATCTTCTGGAA--GGTTTG-TATTCTGAATAGATCCACCATCTA 53075 |||||| |||||||| | ||| | | ||| |||| || || ||||| ||| | Sbjct 9402 TATAAAGATCTTTAATATCCTGTGGTATAGATTTAATATTTTGTATTGATCCTTCATATT 9461 Query 53076 CCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGA 53135 | |||||| || || || |||| | |||||| ||| | ||||| || | | | Sbjct 9462 CAATAATCAGGTTTTTCATTTCATGAGACCATAAATTTAAATTAATTAAATCTTTCAACA 9521 Query 53136 GATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGG 53195 | |||| || | |||||| ||||| | | ||| | ||| |||||||| | Sbjct 9522 AGTATTGATTGACAATTTGAAACTCTCCTGCATGTGTTCTTCTAGTATAAATATTTGAAG 9581 Query 53196 TATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAG 53255 | | || || | | |||||||| |||||||||| ||| ||||| ||||||| Sbjct 9582 TGAATGGCTCAAAGCATTCATTATTATTAAAAATTTGAGAAGTACTAGCAGTAGGCATAG 9641 Query 53256 GTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCC 53314 | | || | | ||||||||| | || | || | || || ||| | || | |||| Sbjct 9642 GAGATACTAGAAGACTATTTCTCACCCCATGCTTTTTTATCTTTTCTCTAAGTAAATTCC 9701 Query 53315 CAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTG 53374 || | || | || | | | | ||| || ||||| Sbjct 9702 ATTTTTCTAAATTTGGAACTTTTTTTTTGCATAACTCAAAGT-GAAAAATTCCTTTACTT 9760 Query 53375 G-CGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACT--C 53431 || | || ||| | |||| || || || || | | | || |||||| ||| | Sbjct 9761 AACGGA-GAGCCTGCGAATGTTTCATAAGGACCATATTCTTTTGCAAGTTCA--ACTGAC 9817 Query 53432 GCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCC 53491 | || | || |||||||| ||||| || || || ||||| |||| || | Sbjct 9818 TCTTCAAGAGCGGAATAATAAATTGTTTCAAATATTTTAAAATTTAAATCTCTAGCATTT 9877 Query 53492 AGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATA 53551 | || ||||| ||||| | || | ||| || ||||| |||||||| ||||| || Sbjct 9878 TGACTGTCAAAAGGATATCGCATTAGTACAAAAGCATCTGCCAATCCTTGTACACCTATT 9937 Query 53552 CCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATA 53611 || ||||||| ||||| ||| ||| | |||| | ||||||| | || | Sbjct 9938 CCAATAGGTCGGTGTCTAAAGTTACTCCTTTTACATTCTTCTACAGGATAAAATGTACTG 9997 Query 53612 TCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA 53671 || ||| ||||| || ||||| || ||||| || | | ||| | |||| Sbjct 9998 TCAATACAATTATTTAGATTTCTTGTTATAACTTTTACAATTTTTGACAGCTCTTCAAAA 10057 Query 53672 TCAAATTGTCCATCTATTACAAACATGTTCAATGCAAT-AGATGCCAGATTACAAACGGC 53730 ||||||| ||| ||| ||||||| | || || ||| | |||||| |||||||| || Sbjct 10058 TCAAATTTTCCTTCTCTTACAAA-ACGTGAAAGACAAACACTTGCCAGGTTACAAACAGC 10116 Query 53731 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 53790 | ||||| ||| | ||||| ||||| || | ||| | ||| | || || | Sbjct 10117 AATTTCATTTTTATCGGAATATTCAATTATTTCTGCGCATAAATTTGATGATTTTATTAT 10176 Query 53791 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGT 53850 || ||||||||||||||||| | | || || | ||| |||||||| ||| |||| || Sbjct 10177 GCCCAAATTTTGTTGATTACTTAATCTATTGCATGTATCTTTATAAAGCATGTATGGTGT 10236 Query 53851 ACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGA 53910 ||| ||||| || || | ||| || || || ||||| | | || ||||| | | Sbjct 10237 ACCTGTTTCTATTTGTGCTTCAATTATTGCCTTCCACAATTTTCTAG-CTTTAACA-ACC 10294 Query 53911 TTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAAC 53970 || ||| | ||| || ||| ||| ||| || ||| | ||| || || |||||||| Sbjct 10295 GTTCTAT-TTTTTGTTCGTTCATATTTTGTGTATAATTTATTAAAATCCTCGCCCCAAAC 10353 Query 53971 ATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 54030 || || | || | || | || || | || ||||| ||| | | | | || Sbjct 10354 ATCATCGAGACCTTTAGCCTCGTTTGGGCAAAATAATGACCATTCTTCATTTTTGTCAAC 10413 Query 54031 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 54090 || || |||||| | |||| ||||| | || |||| | |||||| | |||| || Sbjct 10414 TCTTTCCATAAATAAATCATTTATCCACAATGCAGTAAAAATATCTCTAGCTCTAATATC 10473 Query 54091 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 54150 || |||| ||||| ||| | | ||| | || | | |||||| |||||| ||||| Sbjct 10474 TTCACTTCCGGTATTTTTTCTTAAATCTAAAAAATCAAAAATATCTTTATGCCAAGGTTC 10533 Query 54151 CAAGTATATGGTCATA 54166 || || || | |||| Sbjct 10534 TAAATAAATTGCCATA 10549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717622065280