Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq35 192 9e-44 seq478 165 1e-35 >seq35 Length=73508 Score = 192 bits (212), Expect = 9e-44 Identities = 185/236 (78%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| |||||||||| ||||| ||||| || ||| |||| ||||| | Sbjct 17035 AATGCAAATATTTGTAAAGACACTCACAGGAAAAACAATTACTTTAGATGTTGAACCGGG 17094 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| | || ||| |||| ||||| ||||||||||||||||||||||| ||||| Sbjct 17095 GGATTCTATAGAAAATGTAAAGGCTAAAATACAAGATAAAGAAGGTATACCACCAGATCA 17154 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || ||||| |||||||| || ||||| || ||| | ||||| | | || ||||| Sbjct 17155 ACAGAGACTTATATTTGCAGGTAAGCAATTGGAAGATGGAAGAACACTTAATGACTATAA 17214 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAA 124772 |||||||||||| |||||||||||||| || | ||| ||||||| ||||||| Sbjct 17215 CATTCAAAAAGAAAGTACTTTGCATTTGGTGTTGAGATTAAGAGGTGGTTATTAAA 17270 Score = 107 bits (118), Expect = 3e-18 Identities = 229/344 (67%), Gaps = 2/344 (1%) Strand=Plus/Plus Query 202847 CCACAAATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATAT 202906 ||||| || |||||||| || ||||||||| |||||| ||||| ||| ||||| Sbjct 28131 CCACATATGCACCACATAACACCCGTATATCCATTAGGATCATTACCATCAATAGAATAT 28190 Query 202907 TTATCATTTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAAT 202966 |||||||| | | | |||||||||||||| ||| ||||||| || Sbjct 28191 TTATCATTAAGTTCAATACCAATTTTAACTGCTTCTTCTGGTGTTTTAGTCCATTTTACA 28250 Query 202967 AtttttttAGCCCAATACATTCTTAAATATCCATGCATTTTA-CCATAGATAATCATTTG 203025 | | || ||||| |||||||||| ||||||||| |||||| || |||| | ||| Sbjct 28251 AGCTGCTTGGCCCAGTACATTCTTACATATCCATGAATTTTATTCAATTTTAAT-AGTTG 28309 Query 203026 TTTTTGTGATGCATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACT 203085 |||| | |||||||| ||| | |||| ||| | || | || | | | Sbjct 28310 ATTTTCCGCAGCATTCCAGAAACTATCATTCGTTTTACCGAACTCTAATTCTTCTTTTGT 28369 Query 203086 ATATATATGTTTTCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATT 203145 || | ||| | || ||| ||| |||||| | || | | | ||||||| | | Sbjct 28370 GTACAAATGCTCCCTTTCATCTTTTGCATGTTCGTGTAAGCTATCTCTTGCCCACTCAAG 28429 Query 203146 AGCACCATTTATATTATCGTAATTTTCATTATAATAACAAAAAT 203189 ||||| | || ||||| |||| || ||| | ||||||||||| Sbjct 28430 TGCACCCATAATGTTATCATAATCTTTATTGTGATAACAAAAAT 28473 >seq478 Length=25159 Score = 165 bits (182), Expect = 1e-35 Identities = 181/238 (76%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| |||| || |||||||| |||||||| ||| |||| | || | || Sbjct 21854 AATGCAAATATTTGTAAAAACGCTAACAGGAAAAACTATTACTTTAGACGTAGAGTCTAA 21795 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| | ||| ||| ||||| ||||||||||| |||||||| |||||||| ||||| Sbjct 21794 TGACTCCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATACCACCAGATCA 21735 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA-TTAGAAGATTATA 124716 ||| || | |||||||| || ||||| | || ||| || | ||| |||| ||||| | Sbjct 21734 ACAGAGATTGATTTTTGCTGGTAAACAGCTTGAAGATGGTAGGACACTTAG-TGATTACA 21676 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 |||| || |||||| ||||| ||| | |||||| | ||| |||| || | ||| || Sbjct 21675 ATATACAGAAAGAAAGTACTTTACATCTAGTTTTAAGATTAAGAGGAGGAAATAAGAA 21618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755450938444800