Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq478 98.7 1e-15 >seq478 Length=25159 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/240 (70%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 42948 TCCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 43007 || |||| |||||||||||| | || || | ||| || || || || || || |||||| Sbjct 21619 TCTTATT-TCCTCCTCTTAATCTTAAAACTAGATGTAAAGTACTTTCTTTCTGTATATTG 21677 Query 43008 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 43067 |||||| || |||| | || || ||||| |||||||| || || | || ||| || Sbjct 21678 TAATCACTAAGTGTCCTACCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTCTGTTGA 21737 Query 43068 TCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCT 43126 || | || | | || |||| | ||| |||| | ||| | | | | | ||| | Sbjct 21738 TCTGGTGGTATTCCTTCTTTGT-CTTGAATTTTAGCTTTTACATTTTCAATGGAGTCATT 21796 Query 43127 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || || || | || || ||||| || |||||||| |||||||| ||||||||||| Sbjct 21797 AGACTCTACGTCTAAAGTAATAGTTTTTCCTGTTAGCGTTTTTACAAATATTTGCATTTT 21856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813768822080