Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 302 4e-77 >seq2 Length=91783 Score = 302 bits (334), Expect = 4e-77 Identities = 617/910 (68%), Gaps = 14/910 (2%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTT--CAAAGAAATTTGTTTTTCCTTCTAATGAAATA 16000 ||||||||||| | |||||||||| |||||||||| ||||| ||| |||| ||| Sbjct 37512 TTTTTGATATTG--TGACTCTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATA 37455 Query 16001 TTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAAC 16060 |||||||||||||| || ||||| || | || ||||| || ||| || | | Sbjct 37454 TTTTCCATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATT 37395 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 ||||||||||| || |||||||| ||||| || ||| | | ||| ||||| || || Sbjct 37394 AATAATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATA 37335 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 | || || || | | ||| ||| | ||| ||||| | |||||||| | | | Sbjct 37334 AGATTTACCGGTAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTCACT 37275 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240 ||||| | | | | | || || | ||| | || | | | |||||| Sbjct 37274 ATATCA------AGAATGTGTGGCGATTTATTAATTAAATATTGATTTAGCAAACAAGCG 37221 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 || ||||||||||| ||||| |||||| ||||| || || || || |||||||| ||| Sbjct 37220 AAGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGACCAGGC 37161 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || || |||| || || | ||| || || | ||||||| || ||||| ||||| ||| Sbjct 37160 ATAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATATTCCT 37101 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccat 16420 || || ||||| |||| | || || | | | |||| | || |||||| Sbjct 37100 TCTACGCACGCAAAAGCAATGACGCGTGTCGCGAATGATGATTTTTCATCTTTAATCCAT 37041 Query 16421 tttttagcccaatttgctttttgtttAACACAGTTCAT-GTTCTCTATTGCATTAAATAA 16479 || ||||| | ||||| | ||| | ||| || || || ||| |||||||| | Sbjct 37040 TTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACT-TATCGCATTAAAGAG 36982 Query 16480 ATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGA 16539 || ||||||| | |||| |||||||| |||||||| ||| |||||| || Sbjct 36981 ATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATCTCACT 36922 Query 16540 ATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC 16599 ||||||||| || || |||| ||||| ||||||||||| | ||||| ||||| || Sbjct 36921 ATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTCTAATATTGTCAC 36862 Query 16600 TTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659 |||| || || || |||| || ||||||| || ||||| || |||||||| Sbjct 36861 TTCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGGCAAAAAA 36802 Query 16660 CGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAA 16719 || | || | | |||||| | | |||| ||||| | | |||||| ||| Sbjct 36801 TGCTAAAATATTTGAAATAAAGTATCTTTCTTTATCATTTAATGATAACCAATCATTTCT 36742 Query 16720 ATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACAT 16779 || | || ||| || |||||||| ||||| || || | | || ||||||||||| Sbjct 36741 GTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTTTTATACAT 36682 Query 16780 TTTCCATATGTCTTCGTAAACAATAGGAAACACAACATA-CTTATTTAATGTTGGTTTTA 16838 | ||||||||| | || ||||||||| | |||||| ||| || || |||| |||| Sbjct 36681 CTGCCATATGTCATGATATTTAATAGGAAATAAAACATACCTTTCTTCAT-TTGGATTTA 36623 Query 16839 AAATAGGTTC 16848 | | ||| || Sbjct 36622 ATAAAGGCTC 36613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462508901169600