Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2 235 5e-57 >seq2 Length=91783 Score = 235 bits (260), Expect = 5e-57 Identities = 594/890 (67%), Gaps = 26/890 (3%) Strand=Plus/Minus Query 13912 TTTTTGATATTC--ACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATA 13969 ||||||||||| ||| ||||||| |||||||| || ||||| ||| | | |||| Sbjct 37512 TTTTTGATATTGTGACT--CTCTTTTATCAAAGAAATTGGTTTTCCCTACTAAACTTATA 37455 Query 13970 TTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAAT 14029 |||||||||||||| || ||||| || | | ||| ||| |||| | | | Sbjct 37454 TTTTCCATAAAATCGAAGGGATTCAGTGTATTGTAATATTTCTCAAGTCCTAAATTAATT 37395 Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089 | ||||||||| || | || |||||||||||| |||| | | ||||||||| || || Sbjct 37394 AATAATCTATCAGCTACAAATTCAATATATTGACACATAAGCTTACAATTCATCCCAATA 37335 Query 14090 AGTTTTACAGGAATTATATTGG---TTAAAAATTCTTTTTCTATAGACACAGCCTCGTTT 14146 || ||||| || || | || ||| ||||||||| ||||| || || || || Sbjct 37334 AGATTTACCGG---TAAACTGACACTTAGAAATTCTTTCTCTATTTCTACCGCTTCTTTC 37278 Query 14147 ATAATAATCGTAATAATTTCATTAGAAGGAGGATATT--TTAGATGTTTAAAAATTAAAC 14204 | ||| || || ||| | || |||| ||| || || | | |||| Sbjct 37277 ACTATA-TC--AAGAATGTGTGGCGATT-----TATTAATTAAATATTGATTTAGCAAAC 37226 Query 14205 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 14264 | || || |||||||| | || ||||| ||| ||| | ||| || || || || | | Sbjct 37225 AAGCGAAGTCACAATGCAACCCTTCATCCCTAGAAATTAATTCATTAGAGAAAGTAAGAC 37166 Query 14265 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATA 14324 | ||||| | |||| || |||| ||| || |||| || |||| |||||||| |||| Sbjct 37165 CAGGCATAAGACCTCTGTTCTTTAGCCAGAAGATTGACGCAAATGCGCCGGAAAAAAATA 37106 Query 14325 TTCCCTCAACTGCA-GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383 |||| || || ||| ||||| || || | ||| | || |||| ||||| | Sbjct 37105 TTCCTTCTAC-GCACGCAAAAGCAATGACGCGTGTCGCGAATGATGATTTTTCATCTTTA 37047 Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443 |||||||| ||||| |||| ||| ||||| ||| | || || || |||||| Sbjct 37046 ATCCATTTAAGTGCCCAGTCAGCTTTCTTTTTTATACATGGAATAGTACTTATCGCATTA 36987 Query 14444 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 || | |||| || || | | || ||| || | ||| || | ||| |||||| Sbjct 36986 AAGAGATGTGTTTTTTCATCTTGATCTGTAATATAAGCATCTATTAATAATGAATACATC 36927 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563 ||| || || ||||| || |||| ||||| |||||||| || | |||||| | || Sbjct 36926 TCACTATGAATATTTTCTATGGCTACTTGAAATCCATAAAAGCACTTTGCTTCTAAT-AT 36868 Query 14564 TGTACCTCTGAGTAA--AATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 ||| || | | || ||||| || | ||||| | ||||| |||||||| || | Sbjct 36867 TGTCACT-TCATTAGCGAATCTCTCAACTAAATTGGCGTTAACAATACCATCTGACGCGG 36809 Query 14622 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAAT 14681 |||||||||| || || ||| |||||||||| |||| || | | | | ||||| Sbjct 36808 CAAAAAATGCTAAAATATTTGAAATAAAGTATCTTTCTTTATCATTTAATGATAACCAAT 36749 Query 14682 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTT 14741 | | || || ||||| ||||| || || ||||| || | | ||||||| Sbjct 36748 CATTTCTGTCGGCAGTTAGATCAACTTCTTCTACCGTCCAGAATGATGACTCGGCTTTTT 36689 Query 14742 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTT 14791 ||||||| |||||| || | |||| |||||||| | ||| | ||| Sbjct 36688 TATACATCTGCCATATGTCATGATATTTAATAGGAAATAAAACATACCTT 36639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482342368284480