Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nosema_20ceranae_20[genbank_20GCA_5F000988165.1_202015-05-05] 536 sequences; 5,690,748 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq35 87.8 1e-12 >seq35 Length=73508 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 18134 TTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATA 18193 ||||||||||||||| ||||| | |||| | | |||||||||||| || || ||| | Sbjct 17227 TTCTTTTTGAATGTTATAGTCATTAAGTGTTCTTCCATCTTCCAATTGCTTACCTGCAAA 17168 Query 18194 GATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTG 18253 |||||||| |||||||| || | ||||| ||||| |||| ||| || | Sbjct 17167 TATAAGTCTCTGTTGATCTGGTGGTATACCTTCTTTATCTTGTATTTTAGCCTTTACATT 17108 Query 18254 TGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTAC 18313 | | | || || || || || || | || || |||| || || | ||| ||||| Sbjct 17107 TTCTATAGAATCCCCCGGTTCAACATCTAAAGTAATTGTTTTTCCTGTGAGTGTCTTTAC 17048 Query 18314 AAAAATTTGCATT 18326 ||| ||||||||| Sbjct 17047 AAATATTTGCATT 17035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379341521935320